cytomining/cytominer

Issues

• Increasing the column limits

  #157 opened 3 years ago by kvshams
  0

• Rename whiten -> spherize

  #150 opened 4 years ago by shntnu
  0

• Update cytominer-pipeline vignette to reflect current practices

  #144 opened 5 years ago by shntnu
  0

• cytominer-pipeline error: variables should be modified when having NA features

  #129 opened 5 years ago by PeterLu0403
  0

• install_github fails

  #130 opened 5 years ago by cells2numbers
  2

• Prepare for release

  #136 opened 5 years ago by shntnu
  2

• normalize fails

  #133 opened 5 years ago by cells2numbers
  1

• Failure with development version of tidyr

  #126 opened 5 years ago by hadley
  2

• Aggregate function

  #134 opened 5 years ago by PeterLu0403
  3

• Fix incompatibility with dplyr 0.8

  #131 opened 5 years ago by shntnu
  2

• Consider adding cytominer on conda

  #132 opened 6 years ago by gwaybio
  14

• Fix warning - Missing values are always removed in SQL

  #127 opened 7 years ago by shntnu
  1

• Implement SVD-entropy feature selection

  #50 opened 7 years ago by shntnu
  2

• Implement random projections for covariance profiling

  #115 opened 7 years ago by shntnu
  1

• Pool multiple backend instances

  #33 opened 7 years ago by shntnu
  1

• Create a subpopulation report

  #111 opened 7 years ago by shntnu
  1

• When aggregating a single variable using two or more functions, variable name is not preserved

  #108 opened 7 years ago by shntnu
  1

• Create wiki page for Development and Release

  #104 opened 7 years ago by shntnu
  2

• Don't append aggregation tag to feature name when only a single method

  #120 opened 7 years ago by shntnu
  0

• Document function signatures

  #70 opened 7 years ago by shntnu
  1

• 2nd order moment profiling

  #63 opened 7 years ago by mrohban
  1

• Documentation of extract_subpopulations is not up-to-date

  #112 opened 7 years ago by cells2numbers
  3

• Append aggregation tag to feature name

  #109 opened 7 years ago by shntnu
  1

• Extract subpopulations

  #52 opened 7 years ago by mrohban
  1

• Whiten the data

  #102 opened 7 years ago by mrohban
  1

• Generalize aggreagate

  #105 opened 7 years ago by shntnu
  1

• Incorporate workaround so that SQLite extensions work

  #87 opened 7 years ago by shntnu
  1

• Adopt tidyverse style guide

  #98 opened 7 years ago by shntnu
  1

• Complete CRAN release checklist

  #64 opened 7 years ago by shntnu
  0

• Address CRAN comments

  #94 opened 7 years ago by shntnu
  1

• Update license

  #88 opened 7 years ago by shntnu
  1

• Presence of inst/doc triggering warning

  #85 opened 7 years ago by shntnu
  2

• Handle notes, warnings or update cran-comments before submission

  #83 opened 7 years ago by shntnu
  1

• Handle i386 test failure due to types

  #81 opened 7 years ago by shntnu
  1

• Handle failure of tests on Windows

  #79 opened 7 years ago by shntnu
  1

• Move packages from Imports to Suggests

  #72 opened 7 years ago by shntnu
  1

• Non-standard evaluation (NSE) in dplyr in drop_na_rows

  #73 opened 7 years ago by mrohban
  2

• Document functions

  #46 opened 7 years ago by mcquin
  2

• Decide on data structure for tracking datasets

  #40 opened 7 years ago by shntnu
  5

• Create skeleton for time lapse data analysis

  #41 opened 7 years ago by shntnu
  1

• Add pkgdown page

  #68 opened 7 years ago by shntnu
  1

• Update authors

  #62 opened 7 years ago by shntnu
  1

• drop_na_rows does not work on data frames

  #56 opened 7 years ago by cells2numbers
  1

• Unused argument in correlation_threshold

  #55 opened 7 years ago by cells2numbers
  2

• Handle NAs in normalize

  #59 opened 7 years ago by shntnu
  1

• Implement Similarity network fusion

  #49 opened 7 years ago by shntnu
  4

• Fix build

  #51 opened 7 years ago by shntnu
  1

• rows with identical observations are removed during normalization

  #53 opened 7 years ago by cells2numbers
  2

• Evaluate feature distributions

  #39 opened 8 years ago by shntnu
  1

• rename cytominr to cytominer

  #36 opened 8 years ago by 0x00b1
  0