crispr

There are 129 repositories under crispr topic.

  • davidliwei/awesome-CRISPR

    List of software/websites/databases/other stuff for genome engineering

    473333106

  • lucapinello/CRISPResso

    Software pipeline for the analysis of CRISPR-Cas9 genome editing outcomes from sequencing data

    Language:Python129124655

  • ctSkennerton/minced

    Mining CRISPRs in Environmental Datasets

    Language:Java9463818

  • Russel88/CRISPRCasTyper

    CCTyper: Automatic detection and subtyping of CRISPR-Cas operons

    Language:Python8644715

  • synthego-open/ice

    Synthego ICE - Inference of CRISPR Editing software

    Language:Python62131929

  • mckennalab/FlashFry

    FlashFry: The rapid CRISPR target site characterization tool

    Language:Scala57103610

  • faatehim/xplain

    :earth_americas: Complex Topics Explained For Your Level And Background. :pencil2:

    Language:HTML43443

  • RicardoGEsteves/omniscient

    Cutting-edge Full-stack AI Platform delivered as a SaaS (Software as a Service). Built on a robust technology stack, integrated with powerful APIs such as OpenAI and Replicate, offers a seamless experience for code generation, conversation simulation, image creation, music composition, and video generation.

    Language:TypeScript381112

  • broadinstitute/cell-health

    Predicting Cell Health with Morphological Profiles

    Language:HTML356569

  • ctSkennerton/crass

    The CRISPR assembler

    Language:C++34610011

  • soedinglab/spacepharer

    SpacePHARER CRISPR Spacer Phage-Host pAiRs findER

    Language:C338144

  • epigen/crop-seq

    Data analysis scripts for Datlinger et. al, 2017 (doi:10.1038/nmeth.4177)

    Language:Python2918412

  • fulcrumgenomics/guide-counter

    A better, faster way to count guides in CRISPR screens.

    Language:Rust252103

  • nf-core/crisprseq

    A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted next generation sequencing (NGS) data (`targeted`) as well as the discovery of important genes from knock-out or activation CRISPR-Cas9 screens using CRISPR pooled DNA (`screening`).

    Language:Nextflow221393022

  • crisprVerse/crisprDesign

    Comprehensive design of CRISPR gRNAs for nucleases and base editors

    Language:R162285

  • keoughkath/AlleleAnalyzer

    A software tool for personalized and allele-specific CRISPR editing.

    Language:Jupyter Notebook165185

  • rraadd88/beditor

    A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more

    Language:Python165164

  • sellerslab/gemini

    GEMINI: A variational Bayesian approach to identify genetic interactions from combinatorial CRISPR screens

    Language:R15433

  • felicityallen/JACKS

    Analysis package for processing counts from genome-wide CRISPR/Cas9 screens

    Language:Python1331413

  • Goosang-Yu/genet

    Python library for genome editing, CRISPR gRNA design and prediction

    Language:Python123163

  • pritykinlab/guidescan-cli

    A gRNA database generation tool.

    Language:C++123125

  • crisprVerse/crisprScore

    On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs

    Language:Python112162

  • ArcInstitute/ScreenPro2

    Flexible analysis of high-content CRISPR screening

    Language:Python101431

  • BIMSBbioinfo/crispr_DART

    A workflow to analyse sequence mutations in CRISPR-CAS9 targeted amplicon sequencing data

    Language:R101052

  • crisprVerse/crisprVerse

    Collection of R packages that work in harmony for CRISPR gRNA design

    Language:R10110

  • crisprVerse/Tutorials

    Tutorials for the crisprVerse

    Language:TeX10150

  • EmanuelGoncalves/crispy

    Python module to analyse CRISPR-based libraries

    Language:Python10153

  • tdseher/addtag-project

    CRISPR/Cas-directed HDR genome editing suite: finds+scores gRNA targets, generates donor DNAs, & produces optimal cPCR primer designs.

    Language:Python10202

  • bmds-lab/Crackling

    CRISPR, faster, better – The Crackling method for whole-genome target detection

    Language:C++9487

  • cabbi-bio/CROPSR

    CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

    Language:Python8002

  • H2muller/CROPSR

    CROPSR is a python tool designed for genome-wide gRNA design and evaluation for CRISPR experiments, with special focus on complex genomes such as those found in energy-producing crops. CROPSR is a product of the DOE Center for Advanced Bioenergy and Bioproducts Innovation (CABBI).

    Language:Python8357

  • noamteyssier/sgcount

    A flexible and fast sgRNA counter from FASTQ Files

    Language:Rust82410
  • crispr-bean

    pinellolab/crispr-bean

    Activity-normalized variant effect size estimation from pooled CRISPR screens

    Language:Python82121

  • schmidt73/guidescan-web

    A guideRNA design tool for the modern era.

    Language:Clojure8202

  • EmanuelGoncalves/dtrace

    Integration of pharmacological and drop-out CRISPR-Cas9 screens

    Language:Jupyter Notebook7212

  • fbaumdicker/SpacerPlacer

    ancestral reconstruction and likelihood analysis for CRISPR spacer arrays

    Language:Python7220