ctSkennerton/minced

Issues

• understanding of the output file！

  #41 opened a year ago by allen-zhan340
  2

• I find two CRISPR in genome 'CP069814.1', (23 spacers in CRISPR 1 and 11 spacers in CRISPR 2), I wnder

  #40 opened a year ago by allen-zhan340
  0

• The proportion of the genome of strains containing crispers is too small

  #39 opened 2 years ago by qianxin-kxy
  0

• java.io.FileNotFoundException: <file_name> (Too many open files) Error

  #37 opened 2 years ago by tparket
  4

• portions of repeats annotated as spacers

  #36 opened 2 years ago by acvill
  2

• minced doesn't find a repeat if it is at the start of the fasta file

  #35 opened 2 years ago by Alan-Collins
  1

• output with no repeat&spacer

  #34 opened 3 years ago by 1185307269
  3

• add repeat sequence to database

  #33 opened 3 years ago by fabgenomics
  4

• Java version required for minced?

  #32 opened 4 years ago by top334
  1

• Part of repeat put on spacer sequence

  #21 opened 4 years ago by Russel88
  3

• identify the spacer sense strand

  #31 opened 5 years ago by YiweiZhu
  2

• Name and length of sequence is off in the output

  #30 opened 5 years ago by Russel88
  4

• Bump version string

  #29 opened 5 years ago by dpryan79
  1

• wrapper script not honouring JAVA_HOME

  #28 opened 5 years ago by tseemann
  2

• Minced java error

  #27 opened 6 years ago by sudeep71
  3

• Could you please allow for both gff output and minced file output?

  #26 opened 6 years ago by oddaud
  2

• Error processing input file

  #25 opened 6 years ago by johnomics
  7

• High copy number repeats only found with --minNR 2

  #24 opened 6 years ago by iimog
  2

• have you tried compiling minced with newer java or do i need to use 1.8?

  #23 opened 6 years ago by Phylloxera
  1

• Output with too long spacers

  #22 opened 6 years ago by Russel88
  2

• Add /rpt_type=direct to GFF3 ?

  #20 opened 6 years ago by tseemann
  1

• Exception in thread "main" java.lang.NoClassDefFoundError: IntervalSearchTree$IntervalNode

  #19 opened 7 years ago by tseemann
  7

• Can you compile the jar with -target 1.7 or whatever?

  #18 opened 7 years ago by tseemann
  2

• java error: Exception in thread "main" java.lang.NoClassDefFoundError: IntervalSearchTree$IntervalNode

  #17 opened 7 years ago by Ruonan0101
  6

• Make a 0.2.1 release?

  #16 opened 7 years ago by tseemann
  1

• CRISPRDetect: A flexible algorithm to define CRISPR arrays

  #14 opened 9 years ago by tseemann
  1

• Java error

  #13 opened 9 years ago by bforde
  1

• Unsupported major.minor version 52.0

  #12 opened 9 years ago by tseemann
  2

• minced now in Homebrew

  #10 opened 9 years ago by tseemann
  1

• Sequences with lots of Ns make things run 10x slower

  #8 opened 9 years ago by tseemann
  3

• Option --version not in --help outout

  #9 opened 10 years ago by tseemann
  3

• Need to quote PHYS_DIR in minced launcer shell script

  #5 opened 10 years ago by tseemann
  1

• How do I run the tests?

  #6 opened 10 years ago by tseemann
  1

• Need an option to get the version

  #7 opened 10 years ago by tseemann
  2

• Incorrect GFF location with sequence that is 100% CRISPR

  #4 opened 10 years ago by fangly
  2

• Usage issue

  #1 opened 11 years ago by tseemann
  0

• Improved 'minced' shell wrapper

  #3 opened 11 years ago by tseemann
  0

• Inconsistent column 2 in -gffFull output

  #2 opened 11 years ago by tseemann
  0