dpryan79
Neuroscientist/ion channel biophysicist turned bioinformatician.
Genedata AGBasel, Switzerland / Freiburg, Germany
Pinned Repositories
deepTools
Tools to process and analyze deep sequencing data.
pyBigWig
A python extension for quick access to bigWig and bigBed files
Answers
Random code produced to answer questions on biostars/seqanswers/etc.
bison
Bisulfite alignment on nodes of a cluster
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
libBigWig
A C library for handling bigWig files
MethIndelRealigner
A local realigner around InDels for MethylSeq data
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
Misc
Misc. utilities
SE-MEI
Tools for finding mobile element insertions from single-end datasets
dpryan79's Repositories
dpryan79/ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
dpryan79/MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
dpryan79/libBigWig
A C library for handling bigWig files
dpryan79/pyBigWig
A python extension for quick access to bigWig and bigBed files
dpryan79/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
dpryan79/admin-requests
dpryan79/bioconda-recipes
Conda recipes for the bioconda channel.
dpryan79/bwa-mem2
The next version of bwa-mem
dpryan79/Clair3
Clair3 - Symphonizing pileup and full-alignment for high-performance long-read variant calling
dpryan79/conda-forge-pinning-feedstock
A conda-smithy repository for conda-forge-pinning.
dpryan79/epiAneufinder
R package to detect breakpoints and assign somies to scATAC-seq data
dpryan79/Mana
Command-line tool that analyses ONT alignments (.bam) to report quality control statistics
dpryan79/Mastodon-Bioinformatics
Most simple webapp to bulk follow bioinformatics accounts on Mastodon.
dpryan79/odgi
Optimized Dynamic Genome/Graph Implementation: understanding pangenome graphs
dpryan79/piscem-infer
dpryan79/r-airr-feedstock
A conda-smithy repository for r-airr.
dpryan79/r-base-feedstock
A conda-smithy repository for r-base.
dpryan79/r-brisc-feedstock
A conda-smithy repository for r-brisc.
dpryan79/r-clustercrit-feedstock
A conda-smithy repository for r-clustercrit.
dpryan79/r-compositions-feedstock
A conda-smithy repository for r-compositions.
dpryan79/r-distr6-feedstock
A conda-smithy repository for r-distr6.
dpryan79/r-fstcore-feedstock
A conda-smithy repository for r-fstcore.
dpryan79/r-magick-feedstock
A conda-smithy repository for r-magick.
dpryan79/r-mlr3proba-feedstock
A conda-smithy repository for r-mlr3proba.
dpryan79/r-qs-feedstock
A conda-smithy repository for r-qs.
dpryan79/r-r2dii.data-feedstock
A conda-smithy repository for r-r2dii.data.
dpryan79/r-rjava-feedstock
A conda-smithy repository for r-rjava.
dpryan79/SibeliaZ
A fast whole-genome aligner based on de Bruijn graphs
dpryan79/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
dpryan79/TwoPaCo
A fast constructor of the compressed de Bruijn graph from many genomes