deeptools/pyBigWig

Issues

• addHeader does not support multiple calls

  #142 opened a year ago by rlowe-altoslabs
  1

• Out of memory listing entries on one human chromosome on a machine with 300 GB ram and 165 GB BigBed file

  #148 opened 7 months ago by balwierz
  1

• 'zsh: segmentation fault '

  #147 opened 5 months ago by violacimatti
  1

• pyBigWig.entries() should return empty array, not None when no entries are found

  #149 opened 7 months ago by balwierz
  0

• Document performance considerations?

  #125 opened 3 years ago by alexlenail
  4

• Stats Sum Not Working as Expected

  #146 opened 9 months ago by atancoder
  0

• Simple patch to resolve conflict with roundup() macro

  #145 opened a year ago by outpaddling
  0

• Issue Downloading pyBigWig

  #144 opened a year ago by tdb7dgr
  1

• Support for python >=3.11

  #143 opened a year ago by CodingKaiser
  1

• Suppress logging/error messages

  #123 opened 3 years ago by EricR86
  2

• Can't enforce numpy features when pyBigWig is used as a dependency in downstream package

  #133 opened 2 years ago by EricR86
  5

• Installing through pip not working

  #141 opened 2 years ago by callum-b
  9

• 1-based BigWig file as input

  #119 opened 3 years ago by dshan25
  2

• pip installation broken

  #138 opened 2 years ago by ABignaud
  4

• Writing a nan value should leave a gap

  #132 opened 2 years ago by rcasero
  7

• pyBigWig fails to find numpy installation when installing from PyPI

  #131 opened 2 years ago by EricR86
  5

• Create a BedGraph file using addEntries() throws segmentation fault

  #129 opened 2 years ago by priesgo
  2

• library import error

  #130 opened 2 years ago by chanwkimlab
  4

• support for osx-arm64

  #127 opened 2 years ago by phylyc
  2

• numpy support broken in 0.3.18?

  #128 opened 2 years ago by francois-a
  1

• Cannot add entries of value type int, but only float

  #126 opened 3 years ago by XikunZhang
  2

• RuntimeError: Invalid interval bounds

  #124 opened 3 years ago by Ankita-1211
  0

• BigBed interval problem

  #122 opened 3 years ago by jtd032
  7

• Error Installing pyBigWig

  #120 opened 3 years ago by pzhang312
  11

• [bwGetOverlappingIntervalsCore] Got an error

  #117 opened 3 years ago by wuzhaoqi1015
  3

• Open bw file for appending?

  #118 opened 3 years ago by tncowart
  2

• Problem installing pyBigWig

  #109 opened 4 years ago by beetlejuice007
  3

• Issue installing on macOS: pyBigWig.c:6:10: fatal error: 'values.h' file not found

  #114 opened 4 years ago by kevlarr
  2

• Write bigwig to BytesIO object

  #113 opened 4 years ago by joachimwolff
  4

• error raised when start and end positions are identical.

  #110 opened 4 years ago by fardokhtsadat
  1

• File with incorrect header information read as empty

  #111 opened 4 years ago by dkoes
  4

• Support for GCP bucket access?

  #107 opened 4 years ago by francois-a
  2

• Failure to install pyBigWig package in python3.8-buster container when numpy is installed

  #106 opened 4 years ago by blaiseli
  1

• What is "None" bigwig signal values mean from pyBigWig bw.stats?

  #104 opened 4 years ago by kac2053
  1

• "Empty" values in "manually" constructed bigwig file.

  #100 opened 4 years ago by blaiseli
  3

• How to install pyBigWig in windows?

  #98 opened 4 years ago by burcakotlu
  2

• pybigwig.values produced negative values

  #95 opened 4 years ago by BenxiaHu
  1

• Writing a bigwig file in python3 is extremely slow compared to python2

  #90 opened 4 years ago by Young-Sook
  1

• Mismatch in the magic number when trying to open bigwig file to fix chromosome names

  #105 opened 4 years ago by WimSpee
  2

• Python 3.8 support

  #103 opened 5 years ago by joachimwolff
  2

• Change chromosome names.

  #101 opened 5 years ago by amv33576
  1

• [bug/feature] easier installation and better cross-platform compatibility

  #102 opened 5 years ago by shouldsee
  6

• pyBwGetChroms does not work any more with a BigWig that has headers

  #97 opened 5 years ago by blaiseli
  4

• get the list of all possible stats

  #96 opened 5 years ago by lldelisle
  2

• Can there be overlapping intervals in bigWig files?

  #93 opened 5 years ago by burcakotlu
  7

• IGV fails to read bigWigs generated by pyBigWig

  #89 opened 5 years ago by pbenner
  4

• Segfault when trying to access a non-existing header

  #88 opened 5 years ago by pbenner
  1

• Is memory released on bw.close() ?

  #91 opened 5 years ago by PanosFirmpas
  6

• Declare versioned dependency on libBigWig instead of copying

  #84 opened 5 years ago by smoe
  2

• Reading bigWig files sometimes fails: Uninitialized bwRTree_t->root variable

  #85 opened 6 years ago by pbenner
  2