bigwig

There are 29 repositories under bigwig topic.

deeptools/pyBigWig
A python extension for quick access to bigWig and bigBed files
Language:C222 6 10150
chrovis/cljam
A DNA Sequence Alignment/Map (SAM) library for Clojure
Language:Clojure89 11 3312
dpryan79/libBigWig
A C library for handling bigWig files
Language:C76 5 2925
jackh726/bigtools
A high-performance BigWig and BigBed library in Rust
Language:Rust73 3 327
junjunlab/transPlotR
An elegant package to visualize gene structures
Language:R73 3 103
dputhier/pygtftk
A python package and a set of shell commands to handle GTF files
Language:Python45 5 1826
pbenner/gonetics
Go / Golang Bioinformatics Library
Language:Go45 6 31
nvictus/pybbi
Python bindings to UCSC BigWig and BigBed library
Language:C32 8 173
cancerit/cgpBigWig
BigWig manpulation tools using libBigWig and htslib
Language:C28 12 227
tjparnell/biotoolbox
Tools for querying and analysis of genomic data
Language:Perl27 5 1416
brentp/bigwig-nim
command-line querying+conversion of bigwigs and a nim wrapper for dpryan's libbigwig
Language:Nim16 3 62
JetBrains-Research/big
BigWIG, BigBED and TDF for the JVM
Language:Kotlin13 12 443
LieberInstitute/megadepth
R interface to megadepth: BigWig and BAM related utilities
Language:R11 6 72
BioJulia/BigWig.jl
Language:Julia5 12 02
genotrance/nimbigwig
libBigWig wrapper for Nim
Language:Nim4 3 1
cnluzon/wigglescout
Explore and visualize genomics bigWig data.
Language:R2 2 501
ronin-gw/PyMaSC
Python implementation to calc mappability-sensitive cross-correlation for fragment length estimation and quality control for ChIP-Seq.
Language:Python2 2 20
sirusb/HMMDomainCaller
An HMM-based domain caller from bw
Language:R2 3 01
TurowskiLab/trxtools
Tools to study transcription
Language:Python2 2 60
pwwang/wigtools
A set of tools for wiggle file
Language:Python1 3 01
kiwiroy/alien-kentsrc
Language:Perl0 2 10
Mashin6/thCHART-analyze
Simple pipeline for processing of sequencing data from thCHART, ChIP-seq, APEX-ChIP and similar experiments
Language:Shell0 1 00
petrokvitka/Footprints_extraction
A small script to find peaks from the .bigWig file and output them in a .bed file.
Language:Python0 1 00
cancerit/dockstore-cgpbigwig
RETIRED: Dockstore implementation of cgpBigWig utility. See https://github.com/cancerit/cgpBigWig/
Language:Common Workflow Language13 11
kojix2/bio-bigwig
Ruby wrapper to libBigWig compatible with pyBigWig
Language:C2 1
lindenb/bigwig
Automatically exported from code.google.com/p/bigwig
Language:Java3 3
metamaden/seq_answers
Sequencing data preprocessing
Language:R2 0
pbenner/jigwig
Java BigWig Reader
Language:Java2 0
ronin-gw/mappability-track-pipeline
Generate mappability tracks as BigWig file from genome fasta with GEM
Language:Python2 1

bigwig

deeptools/pyBigWig

chrovis/cljam

dpryan79/libBigWig

jackh726/bigtools

junjunlab/transPlotR

dputhier/pygtftk

pbenner/gonetics

nvictus/pybbi

cancerit/cgpBigWig

tjparnell/biotoolbox

brentp/bigwig-nim

JetBrains-Research/big

LieberInstitute/megadepth

BioJulia/BigWig.jl

genotrance/nimbigwig

cnluzon/wigglescout

ronin-gw/PyMaSC

sirusb/HMMDomainCaller

TurowskiLab/trxtools

pwwang/wigtools

kiwiroy/alien-kentsrc

Mashin6/thCHART-analyze

petrokvitka/Footprints_extraction

cancerit/dockstore-cgpbigwig

kojix2/bio-bigwig

lindenb/bigwig

metamaden/seq_answers

pbenner/jigwig

ronin-gw/mappability-track-pipeline