cnluzon/wigglescout

Issues

• Better handling of warnings

  #110 opened 2 months ago
  0

• Remove uninformative default titles from plots

  #109 opened a month ago
  0

• plot_bw_profile incorrect on stretch mode and different groups of loci when middle = NULL

  #108 opened 6 months ago
  0

• Improve visualization of large heatmaps by interpolation

  #107 opened 7 months ago
  0

• bw_heatmap fails with loci of length 1 and stretch mode

  #106 opened 7 months ago
  0

• bw_loci fails on MACS `narrowPeak` files but processes correctly resulting GRanges

  #98 opened 7 months ago
  0

• How do define genome

  #97 opened 8 months ago
  2

• Better tests for visual outputs

  #96 opened 2 years ago
  0

• plot_bw_loci_summary_heatmap log2fc norm is not zero when bw == bg_bw and remove_top > 0

  #94 opened 2 years ago
  1

• plot_bw_loci_summary_heatmap does not handle single NA values properly

  #84 opened 3 years ago
  0

• r-cmd-check test on other OS

  #80 opened 3 years ago
  0

• Make r-cmd-check fail on BiocCheck fail

  #79 opened 2 years ago
  1

• Adapt plot sizes defaults to medium size screens

  #76 opened 8 months ago
  0

• .multi_bw_ranges several processors test is slow

  #75 opened 3 years ago
  0

• Rasterize point layer in scatterplots

  #73 opened 8 months ago
  0

• Sometimes plot_bw_profile crashes with remove_top

  #70 opened 3 years ago
  1

• Better practices in ggplot functionality

  #69 opened 4 years ago
  0

• Colors are incorrectly assigned in plot_bw_profile

  #68 opened 8 months ago
  0

• Add order_by to heatmap caption

  #67 opened 8 months ago
  0

• Profile plots are missing the x axis kb annotation

  #64 opened 4 years ago
  0

• Make overlayed legend in profile plots transparent

  #62 opened 4 years ago
  0

• Make verbose plots show package version

  #61 opened 4 years ago
  0

• plot_bw_profile fails to execute log2 when norm_mode == "log2fc"

  #58 opened 4 years ago
  1

• plot_bw_profile with background files should divide aggregated values

  #57 opened 4 years ago
  0

• Some loci labels are now full paths instead of basename

  #54 opened 4 years ago
  0

• Caption in verbose plots sometimes too wide

  #53 opened 4 years ago
  1

• Include more information in verbose summarized plots

  #52 opened 4 years ago
  0

• plot_bw_summary_heatmap should not reorder rows

  #50 opened 4 years ago
  0

• Not implemented norm_mode error is not user-friendly

  #42 opened 4 years ago
  0

• Plot scatter body introduces repeated points if GRanges are not deduplicated

  #40 opened 4 years ago
  0

• Summary heatmaps labels are not naturally sorted

  #39 opened 4 years ago
  0

• Verbose plots don't show NA values if remove_top == 0

  #38 opened 4 years ago
  0

• Include selection parameter in bwplot functions that affect bins

  #37 opened 4 years ago
  0

• Name consistently colors across package

  #34 opened 4 years ago
  0

• Remove_top should not remove by mean in scatterplot

  #32 opened 4 years ago
  0

• Provide light clustering functionality for heatmaps

  #31 opened 4 years ago
  0

• Add an order parameter to plot_bw_heatmap

  #30 opened 4 years ago
  1

• Make utils.R functions comply with the dot-function policy

  #29 opened 3 years ago
  0

• Summary heatmap label lacks one parenthesis

  #23 opened 4 years ago
  1

• granges_cbind could probably perform faster

  #21 opened 2 years ago
  1

• norm_func is confusing and does not generalize that much

  #17 opened 4 years ago
  0

• bedfile parameters should be named locus

  #16 opened 4 years ago
  0

• Exclude top percentile loci parameter

  #15 opened 4 years ago
  0

• Add coverage reports to unit testing

  #12 opened 3 years ago
  0

• Factor out validate_ functions from bwtools.R

  #11 opened 4 years ago
  0

• Switch back to getting genome data from GenomeInfoDb

  #10 opened 4 years ago
  1

• Profile bwtools core functions

  #9 opened 4 years ago
  0

• bwtools functions subsample parameter

  #8 opened 4 years ago
  0

• Allow zero flanking region for stretch mode profiles and heatmaps

  #7 opened 4 years ago
  0

• Accept both BED files and GRanges objects

  #6 opened 4 years ago
  1