Pinned Repositories
analysePeaks
A package to compare your peaks for ChIP/CUT&RUN/ATAC... between them
baredSC
Bayesian Approach to Retreive Expression Distribution of Single Cell
galaxyduboule-infrastructure
Everything needed to maintain galaxyduboule or reinstall it from scratch.
galaxydubouleBioblendScripts
Python scripts using bioblend to interact with galaxy more automatically
omeroDubouleUploadAnnotate
Shiny app to upload and annotate data on OMERO
rnaseq_rscripts
Rscripts with config files to analyse/plot RNAseq data
scriptsForAmandioEtAl2021
All the scripts needed to reproduce the NGS figures in Amandio et al. 2021 from raw data.
tools-lldelisle
Tool Shed repositories maintained by Lucille Lopez-Delisle
usefulLDfunctions
a R package with the functions I use regularly
usefulLDfunctionsGR
Functions That I Use Regularly Which depends on GenomicRanges
lldelisle's Repositories
lldelisle/galaxyduboule-infrastructure
Everything needed to maintain galaxyduboule or reinstall it from scratch.
lldelisle/tools-lldelisle
Tool Shed repositories maintained by Lucille Lopez-Delisle
lldelisle/baredSC
Bayesian Approach to Retreive Expression Distribution of Single Cell
lldelisle/myNGSanalysis
How I analyse different NGS commandline or galaxy
lldelisle/bioconda-recipes
Conda recipes for the bioconda channel.
lldelisle/rnaseq_rscripts
Rscripts with config files to analyse/plot RNAseq data
lldelisle/autoupdate
lldelisle/BREW3R.r
The BREW3R.r package to extend GRanges
lldelisle/CITE-seq-Count
A tool that allows to get UMI counts from a single cell protein assay
lldelisle/galaxy
Data intensive science for everyone.
lldelisle/galaxy-hub
Galaxy Community Hub
lldelisle/galaxytools
:microscope::books: Galaxy Tool wrappers
lldelisle/gxadmin
Handy command line utility for Galaxy administrators :rocket:
lldelisle/HiCBrowser
Simple web browser to visualize HiC tracks
lldelisle/HiCMatrix
lldelisle/HiCUP
Hi-C data processing pipeline
lldelisle/idc
Intergalactic (reference) Data Commission
lldelisle/ijp-max-inscribed-circles
ImageJ/Fiji plugin that fills a mask or selection with the largest inscribed cirlces
lldelisle/iwc
Intergalactic Workflow Commission
lldelisle/multi-package-containers
Testing building mulled containers for multi-requirement tools.
lldelisle/peaks2utr
A robust Python tool for the annotation of 3’ UTRs
lldelisle/planemo
Command-line utilities to assist in developing Galaxy and Common Workflow Language artifacts - including tools, workflows, and training materials.
lldelisle/pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
lldelisle/scriptsAroundBaredSCForDarbellayEtAl2024
All scripts used around baredSC (from baredSC run to figure) in Darbellay et al. 2024.
lldelisle/scriptsForLopezDelisleEtAl2021
All the scripts needed to reproduce the figures in Lopez-Delisle and Delisle 2021.
lldelisle/toolBoxForMutantAndWTGenomes
Rscripts to manipulate fasta or gtf.
lldelisle/tools-iuc
Tool Shed repositories maintained by the Intergalactic Utilities Commission
lldelisle/training-material
A collection of Galaxy-related training material
lldelisle/usegalaxy-eu-tools
List of tools included in https://usegalaxy.eu
lldelisle/usegalaxy-tools
usegalaxy.* common tools