Pinned Repositories
HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
HiCMatrix
pyGenomeTracks
python module to plot beautiful and highly customizable genome browser tracks
algorithmsInBioinformatics
Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python
chicago
Fork of the CHiCAGO package from Babraham Institute, Cambridge hosted on bitbucket
fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python
galaxyhowto
First steps to configure a vanilla galaxy instance
Hi-cGAN
scHiCExplorer
Single-cell Hi-C data analysis toolbox
sparse-neighbors-search
A python/c++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hashfunctions.
joachimwolff's Repositories
joachimwolff/scHiCExplorer
Single-cell Hi-C data analysis toolbox
joachimwolff/algorithmsInBioinformatics
Bioinformatics algorithms: Needleman-Wunsch, Feng-Doolittle, Gotoh and Nussinov implemented in Python
joachimwolff/sparse-neighbors-search
A python/c++ implementation of an approximate nearest neighbor search for sparse data structures based on the idea of local sensitiv hashfunctions.
joachimwolff/galaxyhowto
First steps to configure a vanilla galaxy instance
joachimwolff/fit_nbinom
Negative binomial maximum likelihood estimate implementation in Python
joachimwolff/HiCExplorer
HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.
joachimwolff/Hi-cGAN
joachimwolff/backup-bash
Real time file syncing daemon using Rsync and Inotify written in Bash
joachimwolff/bioconda-recipes
Conda recipes for the bioconda channel.
joachimwolff/cHi-C-notebook
joachimwolff/conda-recipes
build and test recipes for conda
joachimwolff/cooler
A cool place to store your Hi-C
joachimwolff/cooler-binder
Cooler demo using a Jupyter notebook Binder
joachimwolff/DNN-pCC
joachimwolff/docker-galaxy-epigenetics
:whale::bar_chart::books: Docker Images for epigenetics data analysis
joachimwolff/EpiNano
Detection of RNA modifications from Oxford Nanopore direct RNA sequencing reads
joachimwolff/fontconfig-feedstock
A conda-smithy repository for fontconfig.
joachimwolff/galaxy
Data intensive science for everyone.
joachimwolff/galaxytools
:microscope::books: Galaxy Tool wrappers
joachimwolff/Knight-Ruiz-Matrix-balancing-algorithm
joachimwolff/machine_learning_101
Machine learning
joachimwolff/MultiQC
Aggregate results from bioinformatics analyses across many samples into a single report.
joachimwolff/MultiQC_TestData
Test data for MultiQC. See https://github.com/ewels/MultiQC
joachimwolff/parallel-fastq-dump
parallel fastq-dump wrapper
joachimwolff/rbc_docs
RBC de.NBI documents
joachimwolff/rna-seq-star-deseq2
RNA-seq workflow using STAR and DESeq2
joachimwolff/scripts
joachimwolff/tools-iuc
Tool Shed repositories maintained and developed by the Intergalactic Utilities Commission
joachimwolff/training-material
A collection of training material from offered Galaxy courses
joachimwolff/website
UseGalaxy.EU website (compiled version https://github.com/usegalaxy-eu/usegalaxy-eu.github.io)