Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
course-uas-intro-bioinformatics
An introductory course to bioinformatics with an emphasis on pipeline development using workflow managers
leptospira-variant-calling
A simple bash pipeline for variant calling based on GATK, samtools, Picard and SnpEff.
covigator
CoVigator - Monitoring SARS-CoV-2 mutations
covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
neofox
Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors
omicron-analysis
Analysis code, data and figures on the omicron MHC binding paper
tronflow-mutect2
Nextflow pipeline for Mutect2 somatic variant calling best practices
vafator
Annotate variants in a VCF file with technical annotations from one or more BAMs
priesgo's Repositories
priesgo/course-uas-intro-bioinformatics
An introductory course to bioinformatics with an emphasis on pipeline development using workflow managers
priesgo/leptospira-variant-calling
A simple bash pipeline for variant calling based on GATK, samtools, Picard and SnpEff.
priesgo/bioconda-recipes
Conda recipes for the bioconda channel.
priesgo/biodata
Java library that models biological entities and their equivalents in different file formats typically used in bioinformatics
priesgo/covigator
CoVigator - Monitoring SARS-CoV-2 mutations
priesgo/covigator-ngs-pipeline
A Nextflow pipeline for NGS variant calling on SARS-CoV-2. From FASTQ files to normalized and annotated VCF files from GATK, BCFtools, LoFreq and iVar.
priesgo/curahack
This repository contains test data for the curahack hackathon
priesgo/GelReportModels
priesgo/ntbcvariantbox
priesgo/opencga
An Open Computational Genomics Analysis platform for big data processing and analysis in genomics
priesgo/pandas
Flexible and powerful data analysis / manipulation library for Python, providing labeled data structures similar to R data.frame objects, statistical functions, and much more
priesgo/priesgo
priesgo profile repo
priesgo/TCGAome
priesgo/test-github-exercises