priesgo

priesgo's Stars

• huggingface/trl

  Train transformer language models with reinforcement learning.

  Language:Python10.1k761.2k1.3k

• bioconda/bioconda-recipes

  Conda recipes for the bioconda channel.

  Language:Shell1.6k971.9k3.3k

• vgteam/vg

  tools for working with genome variation graphs

  Language:C++1.1k472.1k194

• r-lib/actions

  GitHub Actions for the R community

  Language:TypeScript96816582216

• nathanlesage/academics-on-mastodon

  A list of various lists consisting of academics on Mastodon

  925241098

• MichelNivard/gptstudio

  GPT RStudio addins that enable GPT assisted coding, writing & analysis

  Language:R90619119109

• ralphtheninja/open-funding

  A guide for researching ways of funding open source projects.

  726304746

• pascalopitz/unoffical-sonos-controller-for-linux

  An Electron based linux app for controlling your sonos system.

  Language:JavaScript5583916950

• GibbsConsulting/django-plotly-dash

  Expose plotly dash apps as django tags

  Language:Python55623327125

• ComparativeGenomicsToolkit/cactus

  Official home of genome aligner based upon notion of Cactus graphs

  Language:C52322852111

• aertslab/scenicplus

  SCENIC+ is a python package to build gene regulatory networks (GRNs) using combined or separate single-cell gene expression (scRNA-seq) and single-cell chromatin accessibility (scATAC-seq) data.

  Language:Jupyter Notebook1851033929

• secastel/phaser

  phasing and Allele Specific Expression from RNA-seq

  Language:Python111107336

• single-cell-data/TileDB-SOMA

  Python and R SOMA APIs using TileDB’s cloud-native format. Ideal for single-cell data at any scale.

  Language:Python911297425

• connor-lab/ncov2019-artic-nf

  A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

  Language:Nextflow89145388

• BioContainers/mulled

  Mulled - Automatized Containerized Software Repository

  6591537

• goodwright/nextflow.py

  Python wrapper around Nextflow.

  Language:Python57446

• W-L/ProblematicSites_SARS-CoV2

  Language:Python48121415

• KwanLab/Autometa

  Autometa: Automated Extraction of Genomes from Shotgun Metagenomes

  Language:Python40417315

• mamba-org/micromamba-devcontainer

  A micromamba-based VS Code development container image.

  Language:Shell40296

• nf-core/readsimulator

  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.

  Language:Nextflow27168136

• corneliusroemer/desh-data

  Sequence lineage information extracted from RKI sequence data repo

  Language:Jupyter Notebook24323

• masato-ogishi/Repitope

  Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.

  Language:R2311816

• corneliusroemer/pango_aliasor

  Utility to alias and dealias pango lineages

  Language:Python21456

• kierenAW/conda_environments_for_data_science

  Environmental configuration files used to aid in committing Data Science and Machine Learning.

  20138

• koesterlab/microphaser

  Language:Rust12342

• althonos/pyopal

  Cython bindings and Python interface to Opal, a SIMD-accelerated database search aligner.

  Language:Cython8361

• TRON-Bioinformatics/tronflow-hla-hd

  A Nextflow workflow for HLA typing using HLA-HD

  Language:Nextflow8100

• 31z4/tox-docker

  Multi-arch Docker image packaging for tox. Includes common build dependencies and currently active CPython versions.

  Language:Dockerfile7413

• brianjohnhaas/ShrinkGenome

  Shrink a large genome down to predefined functional regions

  Language:Python3300

• TRON-Bioinformatics/variantmedium

  2300