Issues
- 0
Error in phaser_gene_ae.py
#85 opened by netwon123 - 6
Error in using phaser_gene_ae.py
#78 opened by c-nabokov - 0
Issue in function split_read
#84 opened by chrbianchini - 1
phaser_cis_var.py
#83 opened by Yang-Yingshan - 3
phaser annotate module is still py2.7?
#81 opened by FunongLuo - 3
- 5
no alignment score value found in reads
#58 opened by molecularsensei - 2
parameter '--no_gw_phase 0'
#79 opened by shiwobu - 2
Issues with phaser-pop
#74 opened by lilyjiang94 - 0
trying to locate phASER_GTEx_v8_merged.vcf.gz for phaser_cis_var.py (phaser-pop)
#77 opened by 7ehuang - 1
Retrieve parent of origin for haplotypes
#66 opened by vilperte - 1
phaser.py requires pysam
#76 opened by davetang - 3
Container
#75 opened by RenzoTale88 - 4
software is suitable for ChIP-seq data
#73 opened by TaoHJiang - 0
version of phaser on github
#72 opened by ponomarevsy - 3
Error running phaser
#71 opened by Arkosen - 4
question regarding input vcf
#70 opened by lyj95618 - 3
- 0
what kind of vcf file i can use?
#68 opened by woshiyangsi - 0
phASER error
#69 opened by woshiyangsi - 1
Advice on how to run phASER with RNA-seq data only and posed genotypes of parents
#67 opened by apfuentes - 1
phaser_gene_ae output with 0 Count?
#65 opened by deb0612 - 19
FATAL ERROR: No heterozygous sites that passed all filters were included in the analysis
#64 opened by deb0612 - 0
check_dependency("bedtools") == False
#61 opened by deb0612 - 0
How to use phaser without vcf file
#62 opened by darenzhao - 3
- 0
- 2
Prior population phasing with or without WGS?
#50 opened by snaqvi1990 - 5
cannot run phASER to my aligned data
#57 opened by x811zou - 2
No alignment score in BAM file
#56 opened by rahulk87 - 1
subprocess.CalledProcessError
#53 opened by msubirana - 2
RSLVD?: Invalid literal during cutoff: " "
#51 opened by LillianZ - 4
Memory issue on phaser
#44 opened by everestial - 1
Question on out_prefix.vcf.gz
#39 opened by JohnMCMa - 3
- 5
- 11
Phaser assigns incorrect SNVs to genes
#32 opened by GrantHov - 8
Confidence estimate for phased state between two adjacent site within a HaplotypeBlock?
#30 opened by everestial - 11
Ask the use of some of the problems encountered
#29 opened by clsteam - 4
Allele specific expression on multiple samples
#42 opened by mbosio85 - 1
- 1
example fails on blacklist intervals
#54 opened by vjcitn - 1
- 3
Phaser freezing after retrieving reads
#49 opened by clarepacini - 7
Issues with VCF merge after running phaser
#41 opened by everestial - 1
- 3
Loss of AD/DP info after phasing
#40 opened by mbosio85 - 18
problem when running phaser
#37 opened by jfertaj - 1
- 1
phASER based replacement for allelecounter?
#31 opened by JohnMCMa