snaqvi1990
Postdoc, Wysocka & Pritchard labs @ Stanford Incoming faculty @ Boston Children's Hospital/Harvard Medical School
Pinned Repositories
lab-website-template
An easy-to-use, flexible website template for labs.
5Species-12Tissues-RNAseq
Code for processing and analyzing RNA-seq data from five species and twelve tissues for sex differences in gene expression
gen-file-processing
Various utilities for processing sequence and annotation file types common in genomics
leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
Naqvi17-code
R and Python Code used in Naqvi et al, Genome Research 2019, doi: 10.1101/gr.230433.117
naqvilab
Source code for Naqvi lab website
pgc_scrnaseq
Code for analyzing single-cell RNA-seq data from Li et al, Cell Stem Cell 2017
sircel
Identify cell barcodes from single-cell genomics sequencing experiments
sleuth
Inspect kallisto RNA-Seq output
umis
Tools for processing UMI RNA-tag data
snaqvi1990's Repositories
snaqvi1990/5Species-12Tissues-RNAseq
Code for processing and analyzing RNA-seq data from five species and twelve tissues for sex differences in gene expression
snaqvi1990/gen-file-processing
Various utilities for processing sequence and annotation file types common in genomics
snaqvi1990/leafcutter
Annotation-free quantification of RNA splicing. Yang I. Li, David A. Knowles, Jack Humphrey, Alvaro N. Barbeira, Scott P. Dickinson, Hae Kyung Im, Jonathan K. Pritchard
snaqvi1990/Naqvi17-code
R and Python Code used in Naqvi et al, Genome Research 2019, doi: 10.1101/gr.230433.117
snaqvi1990/naqvilab
Source code for Naqvi lab website
snaqvi1990/pgc_scrnaseq
Code for analyzing single-cell RNA-seq data from Li et al, Cell Stem Cell 2017
snaqvi1990/sircel
Identify cell barcodes from single-cell genomics sequencing experiments
snaqvi1990/sleuth
Inspect kallisto RNA-Seq output
snaqvi1990/umis
Tools for processing UMI RNA-tag data