blaiseli
PhD (Paris, France), then post-doc in phylogeny (Torino, Italy, then Faro, Portugal), I'm now a bioinformatics research engineer (Montpellier and now Paris).
Pinned Repositories
aiostream
Generator-based operators for asynchronous iteration
bioconda-recipes
Conda recipes for the bioconda channel.
biopython
My fork to test things with biopython.
blaiseli.github.io
data_exploration
Some data exploration
deepTools
Tools to process and analyze deep sequencing data.
ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
fastq-tools
Small utilities for working with fastq sequence files.
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
GIP
Genome Instability Pipeline
blaiseli's Repositories
blaiseli/aiostream
Generator-based operators for asynchronous iteration
blaiseli/bioconda-recipes
Conda recipes for the bioconda channel.
blaiseli/biopython
My fork to test things with biopython.
blaiseli/blaiseli.github.io
blaiseli/data_exploration
Some data exploration
blaiseli/deepTools
Tools to process and analyze deep sequencing data.
blaiseli/ete
Python package for building, comparing, annotating, manipulating and visualising trees. It provides a comprehensive API and a collection of command line tools, including utilities to work with the NCBI taxonomy tree.
blaiseli/fastq-tools
Small utilities for working with fastq sequence files.
blaiseli/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
blaiseli/GIP
Genome Instability Pipeline
blaiseli/hmmer
HMMER: biological sequence analysis using profile HMMs
blaiseli/hpc-python
HPC Python lesson materials
blaiseli/learnxinyminutes-docs
Code documentation written as code! How novel and totally my idea!
blaiseli/ngslib
Next Generation Sequencing libraries in Python
blaiseli/p4-phylogenetics
A Python phyloinformatic toolkit, and an implementation of tree-heterogeneous models of evolution
blaiseli/plotnine
A grammar of graphics for Python
blaiseli/pybedtools
Python wrapper -- and more -- for Aaron Quinlan's BEDTools (bioinformatics tools)
blaiseli/pyGATB
Python3 wrapper for GATB-Core.
blaiseli/R_install_notes
blaiseli/RiboDiff
RiboDiff: Tool to detect changes in translational efficiency based on ribosome footprinting data
blaiseli/samtools
Tools (written in C using htslib) for manipulating next-generation sequencing data
blaiseli/seaborn
Statistical data visualization using matplotlib
blaiseli/snakemake
This is the development home of the workflow management system Snakemake. For general information, see
blaiseli/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
blaiseli/staythefuckhome
The #StayTheFuckHome Website
blaiseli/vcflib
C++ library and cmdline tools for parsing and manipulating VCF files with python and zig bindings