dpryan79
Neuroscientist/ion channel biophysicist turned bioinformatician.
Genedata AGBasel, Switzerland / Freiburg, Germany
Pinned Repositories
deepTools
Tools to process and analyze deep sequencing data.
pyBigWig
A python extension for quick access to bigWig and bigBed files
Answers
Random code produced to answer questions on biostars/seqanswers/etc.
bison
Bisulfite alignment on nodes of a cluster
ChromosomeMappings
This repository contains chromosome/contig name mappings between UCSC <-> Ensembl <-> Gencode for a variety of genomes.
libBigWig
A C library for handling bigWig files
MethIndelRealigner
A local realigner around InDels for MethylSeq data
MethylDackel
A (mostly) universal methylation extractor for BS-seq experiments.
Misc
Misc. utilities
SE-MEI
Tools for finding mobile element insertions from single-end datasets
dpryan79's Repositories
dpryan79/bhsw_covid_incidence
Covid-19 incidence per week by community in Breisgau-Hochschwarzwald
dpryan79/Corset
Software for clustering de novo assembled transcripts and counting overlapping reads
dpryan79/densityClust
Clustering by fast search and find of density peaks
dpryan79/KAT
The K-mer Analysis Toolkit (KAT) contains a number of tools that analyse and compare K-mer spectra.
dpryan79/ldc-feedstock
A conda-smithy repository for ldc.
dpryan79/r-adephylo-feedstock
A conda-smithy repository for r-adephylo.
dpryan79/r-beeswarm-feedstock
A conda-smithy repository for r-beeswarm.
dpryan79/r-boolnet-feedstock
A conda-smithy repository for r-boolnet.
dpryan79/r-coop-feedstock
A conda-smithy repository for r-coop.
dpryan79/r-densityclust-feedstock
A conda-smithy repository for r-densityclust.
dpryan79/r-desolve-feedstock
A conda-smithy repository for r-desolve.
dpryan79/r-distrex-feedstock
A conda-smithy repository for r-distrex.
dpryan79/r-dplr-feedstock
A conda-smithy repository for r-dplr.
dpryan79/r-fftwtools-feedstock
A conda-smithy repository for r-fftwtools.
dpryan79/r-gsl-feedstock
A conda-smithy repository for r-gsl.
dpryan79/r-gwasexacthw-feedstock
A conda-smithy repository for r-gwasexacthw.
dpryan79/r-luminescence-feedstock
A conda-smithy repository for r-luminescence.
dpryan79/r-matrixcorrelation-feedstock
A conda-smithy repository for r-matrixcorrelation.
dpryan79/r-mbsts-feedstock
A conda-smithy repository for r-mbsts.
dpryan79/r-mlr-feedstock
A conda-smithy repository for r-mlr.
dpryan79/r-mlrmbo-feedstock
A conda-smithy repository for r-mlrmbo.
dpryan79/r-phangorn-feedstock
A conda-smithy repository for r-phangorn.
dpryan79/r-phylobase-feedstock
A conda-smithy repository for r-phylobase.
dpryan79/r-phylosignal-feedstock
A conda-smithy repository for r-phylosignal.
dpryan79/r-randomforestsrc-feedstock
A conda-smithy repository for r-randomforestsrc.
dpryan79/r-rcppthread-feedstock
A conda-smithy repository for r-rcppthread.
dpryan79/r-slam-feedstock
A conda-smithy repository for r-slam.
dpryan79/r-survivalsvm-feedstock
A conda-smithy repository for r-survivalsvm.
dpryan79/r-xml-feedstock
A conda-smithy repository for r-xml.
dpryan79/root5-feedstock
A conda-smithy repository for root5.