lucapinello/CRISPResso

Issues

• Alignment error, please check your input

  #55 opened 5 years ago by StevenVB12
  0

• Longer Allele Sequences

  #53 opened 5 years ago by amarcog
  4

• CRISPResso command failed (return value 127) on region #0:

  #52 opened 5 years ago by pankajki
  1

• Last stage error Error with FLASH for CRISPRessoPooled.py

  #51 opened 5 years ago by bilalSarwar2020
  5

• Left-aligning option

  #48 opened 5 years ago by dfajar2
  7

• Running failed with the example sequences

  #5 opened 8 years ago by MagpiePKU
  11

• Specify the FLASH --max-overlap parameter?

  #16 opened 7 years ago by martinaryee
  4

• Appears to be counting reads with deletions as unedited

  #50 opened 6 years ago by AGRaeside
  1

• ERROR: Flash failed to run, please check the log file.

  #49 opened 6 years ago by madeleinesitton
  1

• CRIPRessoPooled - query

  #38 opened 6 years ago by frankbioinfo
  1

• modify the python scripts for availability to other CRISPR systems

  #47 opened 6 years ago by tiramisutes
  1

• ERROR: The amplicons should be all distinct!

  #46 opened 6 years ago by tiramisutes
  1

• Error while generating plots with Cpf1 data

  #44 opened 6 years ago by dfajar2
  4

• [FLASH] ERROR: Maximum overlap (-173) cannot be less than the minimum overlap (4).

  #45 opened 6 years ago by hffqyd
  1

• Error "'numpy.int64'

  #34 opened 6 years ago by amarcog
  7

• Run for a long times

  #41 opened 6 years ago by tiramisutes
  3

• free variable 'df_genes' referenced before assignment in enclosing scope", u'occurred at index Site1'

  #39 opened 6 years ago by tiramisutes
  7

• FLASH: Low Percent Combined

  #37 opened 6 years ago by Transmystical
  2

• Use --min_identity_score for read vs amplicon

  #36 opened 6 years ago by rakarnik
  3

• Front End Code

  #35 opened 6 years ago by ksindy
  4

• Unexpected error: invalid literal for int() with base 10: '0rc1'

  #33 opened 7 years ago by strohmjeff
  10

• mutation frequency plot

  #30 opened 7 years ago by frankbioinfo
  1

• ERROR: If using all scalar values, you must pass an index

  #29 opened 7 years ago by strohmjeff
  3

• crispressoweb dockerfile

  #28 opened 7 years ago by chriscatalyticds
  1

• Different results from online and command line CRISPResso with same data and parameters

  #27 opened 7 years ago by miikaelf
  5

• Error with FLASH for CRISPResso

  #24 opened 7 years ago by mtoetzl
  13

• No reads aligned?

  #26 opened 7 years ago by milw
  4

• Make installing of external dependencies optional

  #25 opened 7 years ago by jrderuiter
  2

• no of reads from pie chart and alleles do not add up

  #23 opened 7 years ago by frankbioinfo
  2

• Running CRISPResso - query

  #22 opened 7 years ago by frankbioinfo
  1

• If guide seq is wrong, do not crash instead run without guide seq

  #21 opened 7 years ago by Imoteph
  3

• Trimming adapter sequences that are not Nextera

  #20 opened 7 years ago by nanez20
  1

• Running with non-overlapping reads

  #2 opened 8 years ago by mdshw5
  8

• Issue with ONLY AMPLICONS running mode

  #19 opened 7 years ago by amarcog
  6

• Python error running locally

  #18 opened 7 years ago by danielnavarrogomez
  2

• CRISPResso available on bioconda

  #9 opened 8 years ago by tomkinsc
  1

• Trailing whitespace in the amplicon sequence is not tolerated

  #17 opened 7 years ago by martinaryee
  0

• Window around cleavage position seems to be asymmetrical

  #15 opened 7 years ago by mdyckmanns
  7

• ERROR: 'transform' must be an instance of 'matplotlib.transform.Transform'

  #6 opened 8 years ago by MLKaufman
  9

• RuntimeWarning: invalid value encountered in divide

  #13 opened 8 years ago by mmcneill123
  6

• Amplicon Sequence

  #12 opened 8 years ago by steve-shan
  14

• Flash failed to run flash

  #11 opened 8 years ago by steve-shan
  1

• Tests

  #8 opened 8 years ago by magniff
  4

• Error with Flash

  #7 opened 8 years ago by murphycj
  2

• CRISPRessoPooledWGSCompare - hasnans

  #4 opened 8 years ago by aaiezza
  3

• Deprecation of convert_objects causing fatal error

  #3 opened 8 years ago by aaiezza
  6