Pinned Repositories
bioconda-recipes
Conda recipes for the bioconda channel.
cms
Composite of Multiple Signals: tests for selection in meiotically recombinant populations
sabetilab-remote-config
configuration files for systems deployed at collaborating sites in West Africa (Ansible, route53, autossh)
sequence-upload-to-gs
Incremental upload of Illumina sequencing runs to GS from a companion computer, or directly from Linux-based Illumina sequencers
viral-pipelines
viral-ngs: complete pipelines
carcassonne-shading
Small JS app to manipulate SVG files for printing or laser-cutting tiles for the board game Carcassonne.
Laser-Cooler
A custom radiator system for cooling a 40W laser cutter.
open-spectrometer
Code, mechanical designs, and electronic plans related to the OpenSpectrometer project.
tomkinsc's Repositories
tomkinsc/carcassonne-shading
Small JS app to manipulate SVG files for printing or laser-cutting tiles for the board game Carcassonne.
tomkinsc/snipit
snipit: summarise snps relative to your reference sequence
tomkinsc/augur
Pipeline components for real-time phylodynamic analysis
tomkinsc/auspice
Web app for visualizing pathogen evolution
tomkinsc/author-affiliations
Number and format affiliations in an author list.
tomkinsc/bioconda.github.io
Bioconda is a distribution of bioinformatics software realized as a channel for the versatile package manager Conda.
tomkinsc/conda
OS-agnostic, system-level binary package manager and ecosystem
tomkinsc/delphy
Fast, scalable, accurate and accessible Bayesian phylogenetics
tomkinsc/dx-streaming-upload
The DNAnexus incremental upload script packaged as an Ansible Role
tomkinsc/Freyja
Depth-weighted De-Mixing
tomkinsc/galaxy
Data intensive science for everyone.
tomkinsc/homebridge-ecowitt
A Homebridge plugin supporting a wide range of Ecowitt sensors
tomkinsc/igv-reports
Python application to generate self-contained igv.js pages that can be opened within a browser with "file" protocol.
tomkinsc/Krona
Interactively explore metagenomes and more from a web browser.
tomkinsc/LDBlockShow
LDBlockShow: a fast and convenient tool for visualizing linkage disequilibrium and haplotype blocks based on VCF files
tomkinsc/libseek-thermal
SEEK thermal compact camera driver supporting the thermal Compact, thermal CompactXR and and thermal CompactPRO
tomkinsc/miniwdl-colima
implementation for miniwdl colima backend plugin
tomkinsc/moto-feedstock
A conda-smithy repository for moto.
tomkinsc/ncov
Nextstrain build for novel coronavirus SARS-CoV-2
tomkinsc/perl-feedstock
A conda-smithy repository for perl.
tomkinsc/picard
A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.
tomkinsc/popart-current
tomkinsc/ps70
Course Repository for PHYSCI 70: Introduction to Digital Fabrication
tomkinsc/scipaper-snakemake-2020
SciPaper project.
tomkinsc/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
tomkinsc/subsampler
forked from andersonbrito/subsampler: scripts for subsampling genomic data based on epidemiological time series data
tomkinsc/VEME_2023_NGS_Denovo_assembly
VEME 2023 NGS Denovo Assembly Tutorial
tomkinsc/VEME_2024_NGS_Variant_Calling
tomkinsc/VEME_NGS_Variant_Calling
VEME 2023 NGS Variant Calling Tutorial
tomkinsc/viral-ngs
viral-ngs