broadinstitute/cms

Issues

• run "cms_modeller.py target_stats", No output and no error report

  #232 opened a year ago by LDS-axel
  0

• FileNotFoundError: [Errno 2] No such file or directory

  #231 opened 5 years ago by kizzhengwangshan
  0

• python-dateutil 2.3 missing from conda

  #227 opened 6 years ago by mkzia
  2

• update dynamic loading of genotype coding function/module to use importlib

  #226 opened 6 years ago by tomkinsc
  0

• Improvement on sample_header_line function (vcf reader)

  #222 opened 7 years ago by gbss2
  1

• selscan_file_conversion throws unexpected error with X chromosome

  #219 opened 7 years ago by josephvitti
  6

• conda/scans.py heterogenous behavior on Harvard cluster (Odyssey)

  #199 opened 8 years ago by josephvitti
  3

• scans.py error

  #200 opened 8 years ago by taylorreiter
  5

• gratuitous selscan install

  #150 opened 8 years ago by josephvitti
  12

• scans.py calls incorrect binary to perform normalization with selscan

  #87 opened 8 years ago by josephvitti
  1

• selscan_file_conversion crashing (pysam?)

  #71 opened 8 years ago by josephvitti
  10

• permissions error for conda env create on Broad server

  #49 opened 8 years ago by josephvitti
  1

• scans.py calls old version of selscan that rejects ten-column output for normalization

  #16 opened 9 years ago by josephvitti
  1

• selscan's norm function for iHS expects 6 entries of input

  #14 opened 9 years ago by josephvitti
  2

• --considerMultiAllelic flag to toggle handling of duplicate pos rows in (e.g.) 1KG VCFs

  #11 opened 10 years ago by josephvitti
  1

• Adjust selscan.py to correctly read allosomal VCF files.

  #5 opened 10 years ago by tomkinsc
  1

• local installation issue

  #7 opened 10 years ago by josephvitti
  2

• integrate option to normalize iHS/XP-EHH values using selscan

  #6 opened 10 years ago by josephvitti
  2