crisprVerse/crisprDesign

Issues

• crisprViz: Error in TxDb2GRangesList (.getBiomartData(txdb, organism) : Organism "NA" not recognized in biomaRt)

  #36 opened 8 months ago by stefanusbernard
  4

• Error addCrispraiScores()

  #37 opened 2 months ago by dr-jwb
  0

• addGeneAnnotation module can not annotate the genes on the minus strand

  #35 opened 4 months ago by fsnibs10
  3

• Unexpected PAM truncation

  #34 opened 5 months ago by RussBainer
  2

• `addEditedAlleles()` fails when the guide sequence is not editable

  #33 opened 6 months ago by RussBainer
  3

• Validating Existing gRNA Libraries - Error in Off-Target Characterization (addSpacerAlignment)

  #19 opened 2 years ago by stefanusbernard
  7

• Support guide efficiency prediction for DjCas13d [feature request]

  #31 opened 9 months ago by abearab
  1

• AddOnTargetScores unable to run due to error with creating conda environment

  #29 opened a year ago by benjytan88
  2

• Error building gene annotation object with GFF for CHM13v2.0

  #26 opened 10 months ago by benjytan88
  3

• Design spacer for CRISPR-Csm transcript targeting systems [feature request]

  #28 opened a year ago by abearab
  2

• GuideSet2DataFrames: improvements

  #22 opened a year ago by Jfortin1
  0

• MIT/CFD scores when spacers are duplicated

  #18 opened 2 years ago by Jfortin1
  0

• error when constructing a tssObject using yeast gff file

  #24 opened a year ago by adrbmdns
  2

• DNA and RNA bulge off target DSB

  #23 opened a year ago by frvcw
  1

• CrisprVerse problem: export a guideSet in a file

  #15 opened 2 years ago by frvcw
  2

• Increase barcode length for Levenshtein distance

  #21 opened a year ago by Jfortin1
  0

• `addSpacerAlignments` fails to find off-targets with bowtie and custom genomes

  #20 opened a year ago by m-jahn
  5

• `max_mm` vs `n_mismatches`

  #17 opened 2 years ago by MatthewPace98
  2

• Alignments error while using `PairedGuideSet` object as input

  #12 opened 2 years ago by abearab
  2

• `addSpacerAlignments` maximum `n_mismatches` query

  #16 opened 2 years ago by MatthewPace98
  1

• addSpacerAlignments Error in .new_IRanges_from_start_width(start, width) : 'start' or 'width' cannot contain NAs

  #10 opened 2 years ago by MatthewPace98
  6

• Change default to FALSE for standard_chr_only

  #14 opened 2 years ago by Jfortin1
  1

• len arguments in spacers accessor function

  #1 opened 2 years ago by Jfortin1
  0

• guideSetExampleFullAnnotation lacking exon_id in geneAnnotation.

  #6 opened 2 years ago by ltHobbes
  1

• what's the meaning of "alignments" in GuideSet object ?

  #9 opened 2 years ago by panxiaoguang
  2

• Web UI crisprVerse designer

  #8 opened 2 years ago by tonyreina
  1

• `addSpacerAlignmentsIterative` – Error in `curl::curl_fetch_memory`

  #11 opened 2 years ago by abearab
  3

• I don't konw why but the off-targets found by addSpacerAlignments was abosolutlely wrong?

  #4 opened 2 years ago by panxiaoguang
  1

• "downstreamATG" colname misspelled

  #5 opened 2 years ago by ltHobbes
  0

• The style specified by 'NCBI' does not have a compatible entry for the species Danio rerio

  #2 opened 2 years ago by panxiaoguang
  1

• onTargets for guideSet object always get nothing

  #3 opened 2 years ago by panxiaoguang
  0