crispr-design
There are 20 repositories under crispr-design topic.
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
crisprVerse/crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
pritykinlab/guidescan-cli
a guideRNA database generation tool
crisprVerse/crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
bmds-lab/Crackling
CRISPR, faster, better – The Crackling method for whole-genome target detection
crisprVerse/Tutorials
Tutorials for the crisprVerse
schmidt73/guidescan-web
A guideRNA design tool for the modern era.
crisprVerse/crisprViz
Visualization of CRISPR guide RNAs (gRNAs)
crisprVerse/crisprBase
Base functions and classes for CRISPR gRNA design
crisprVerse/crisprDesignData
Useful human and mouse data for the crisprVerse ecosystem
SubGlitch1/GuideRNA_Designer
CRISPR Guide RNA Designer
crisprVerse/crisprBowtie
Bowtie-based alignment of CRISPR gRNA spacer sequences
MPUSP/snakemake-crispr-guides
A Snakemake workflow for the design of small guide RNAs (sgRNAs) for CRISPR applications.
crisprVerse/crisprScoreData
Pre-trained models for the crisprScore package
crisprVerse/crisprShiny
Shiny interface for CRISPR gRNAs designed with the crisprVerse
crisprVerse/crisprBwa
BWA-based alignment of CRISPR gRNA spacer sequences
milescsmith/Azimuth
Fork of Azimuth (Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency), updated to work with Python 3.10+
pablocarderam/genetargeter
Creates a construct developed by the Niles Lab at MIT, designed to deliver a 3' UTR post-transcriptional regulatory element payload to a specific given gene in Plasmodium falciparum.
ucrbioinfo/allegro
ALLEGRO: An Algorithm Leveraging Linear Programing to Enhance Guide RNA Optimization
scbirlab/ogilo
⛓️ Automating construction of oligo library sequences for oligo array synthesis.