Jfortin1

Senior Principal Scientist @ Genentech

GenentechSan Francisco

Pinned Repositories

crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Language:R20 2 326
crisprVerse
Collection of R packages that work in harmony for CRISPR gRNA design
Language:R12 1 10
ComBatHarmonization
Harmonization of multi-site imaging data with ComBat
Language:R268 14 42107
HiC_AB_Compartments
12 3 01
MNITemplate
MNI152 Template
Language:R37 4 010
neuroCombat
Harmonization of multi-site imaging data with ComBat (Python)
Language:Python126 4 2137
neuroCombat_Rpackage
neuroCombat R package
Language:HTML23 4 58
RAVEL
Intensity normalization of structural MRIs using RAVEL
Language:HTML27 5 513
TCGA_AB_Compartments
A/B compartments for 12 cancer types estimated from TCGA methylation data
Language:R18 6 07

Jfortin1's Repositories

Jfortin1/ComBatHarmonization
Harmonization of multi-site imaging data with ComBat
Language:R268 14 42107
Jfortin1/neuroCombat
Harmonization of multi-site imaging data with ComBat (Python)
Language:Python126 4 2137
Jfortin1/MNITemplate
MNI152 Template
Language:R37 4 010
Jfortin1/RAVEL
Intensity normalization of structural MRIs using RAVEL
Language:HTML27 5 513
Jfortin1/neuroCombat_Rpackage
neuroCombat R package
Language:HTML23 4 58
Jfortin1/TCGA_AB_Compartments
A/B compartments for 12 cancer types estimated from TCGA methylation data
Language:R18 6 07
Jfortin1/HiC_AB_Compartments
12 3 01
Jfortin1/EveTemplate
JHU-MNI-ss (Eve) Template
Language:R11 5 36
Jfortin1/shinyMethyl
Interactive visualization of Illumina methylation array data
Language:R5 3 8
Jfortin1/neuroCombatData
Example dataset for neuroCombat in R
Language:R2 2 01
Jfortin1/tcgaR
TCGA R Portal
Language:R2 2 2
Jfortin1/arbalist
Migrating ArchR's core functionality to Bioconductor
Language:C++1 4 0
Jfortin1/awesome-CRISPR
List of software/websites/databases/other stuff for genome engineering
1 0 0
Jfortin1/crisporWebsite
All source code of the crispor.org website
Language:HTML1 1 0
Jfortin1/HiC_AB_Compartments_Mouse
Language:R1 2 02
Jfortin1/neurocombat_sklearn
Implementation of Combat harmonization method with scikit-learn compatible format
Language:Python1 1 0
Jfortin1/neuroHarmonize
Harmonization tools for multi-site neuroimaging analysis. Implemented as a python package. Harmonization of MRI, sMRI, dMRI, fMRI variables. NIFTI harmonization support in development. Complements the work in Neuroimage by Pomponio et al. (2019).
Language:Python1 1 0
Jfortin1/basilisk
Clone of the Bioconductor repository for the basilisk package.
Language:R1 0
Jfortin1/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.major
Language:R2 0
Jfortin1/BSgenome.Hsapiens.UCSC.hg38.dbSNP151.minor
Language:R2 0
Jfortin1/DeepHF
Core code for the DeepHF prediction tool
Language:Jupyter Notebook1 0
Jfortin1/Jfortin1
1 0
Jfortin1/Lindel
Language:Python1 0
Jfortin1/mimosa
An R package to implement MIMoSA: A Method for Inter-Modal Segmentation Analysis
Language:R1 0
Jfortin1/minfi
Devel repository for minfi
Language:R2 0
Jfortin1/misc
2 0
Jfortin1/Paired-Library
Language:Python1 0
Jfortin1/protiler
protiler method
Language:Jupyter Notebook1 0
Jfortin1/RAVELData
Data package for RAVEL
Language:R3 02
Jfortin1/SelfTarget
Scripts for processing and predicting CRISPR/Cas9-generated mutations
Language:Python1 0