genomics-analysis
There are 38 repositories under genomics-analysis topic.
TimD1/vcfdist
vcfdist: Accurately benchmarking phased variant calls
lynnlangit/TeamTeri
Bioinformatics on GCP, AWS or Azure
jessicabonnie/dandd
Tool to estimate deltas for sequence sets and answer questions about relative contribution
tobiasrausch/vc
A tutorial on structural variant calling for short read sequencing data
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
IPK-BIT/divbrowse
A web application for interactive visualization and exploratory data analysis of variant call matrices
epifluidlab/FinaleToolkit
FinaleToolkit is a package and standalone program to extract fragmentation features of cell-free DNA from paired-end sequencing data.
BenjaminNarhMadey/R-Codes-for-Plant-Breeding-Genetics-Statistics-and-Genomics
This repository serves as a valuable resource for individuals engaged in data exploration, statistical analysis, and research within the domains of plant breeding, genetics, statistics, and genomics. The purpose of this repository is to share a collection of R codes that can be utilized by others for their own data analysis projects
oh-jinwoo94/gkm-align
gapped-kmer based whole genome alignment software
mrdanieleze/Genomic-Sequence-Comparison-Code-GSCC-
This repository houses the Genomic Sequence Comparison Code (GSCC), a collection of Python scripts designed for genomic sequence analysis. Whether you're comparing suspected sequences with known reference sequences or delving into bioinformatics, GSCC provides versatile tools for pairwise alignment. Feel free to explore!
tobiasrausch/sv
Structural variant calling tutorial using long-reads.
AlirezaT99/ML-in-Omics
Machine Learning in Omics: Integration of Metagenomics and Metabolomics.
DrStef/Machine-Learning-and-Digital-Signal-Processing-for-Genome-Classification
Supervised classification of various species DNA sequences using FFT and Machine Learning.
giffordlabcvr/HBV-GLUE
A GLUE project for hepatitis B virus (HBV).
ngodron/SNPs_and_clones
Genetic Algorithm implementation to study haplotypes of genomic features
sscansan/genomics_and_GWAS_tutorials
Analysis of SNP variants, derived from chip array genotyping and HTS sequencing
zeropin/TECookbook
R package for annotating and parsing transposable elements-associated data
jkissing/jcklab-public
Kissinger Research Group Shared Code
johnvusich/johnvusich.github.io
My personal website
JordyCoolen/RC-PCR_CLASSIFIER
Reverse Complement PCR (RC-PCR_ Classification pipeline.
lasseignelab/230227_JW_Setbp1Manuscript
Framework for investigation of cell-type-specific regulation and expression in rare disease
LoganXav/GenomicsDnaToolkit
A class of utilities for processing DNA sequencing reads in computational genomics
luisagmazuca/Post-Genomics
This repository contains the file codes used to complete the final project for the course Post Genomic Analysis.
OrangePomeranian/genomics_project
Genomic Analysis of Canis lupus with the use of Genomic Maps and Philogenetic Trees
Orpowell/NLR-Assembler
NLR-Assembler is a command line tool for improving RenSeq Assemblies using linked-read sequencing by 10x Genomics.
parthian-sterlet/antinoise
Extraction of genomic background set of DNA sequences for a given foreground set of sequences for subsequent de novo motif discovery
ranjanjs34/weap
Automating WES Data analysis (primarily of Cancer).
recanoy/Coursera_PythonForGenomicDataScience_FinalExam
Final Exam for Coursera's Python for Genomic Data Science course
zbates1/zb-deepmind-terminator
Using NVIDIA Deepmind's Nucleotide Transformer to generate embeddings for yeast genomes.
asntech/2024-04-25-rutgers
Genomics Carpentries Workshop at Rutgers University, April 25-26, 2024
jakubovciak/Vertebrate_Head
Scripts used for analysis of single cell RNA-Seq data presented in Markos 2024 paper.
lasseignelab/230227_EJ_MouseBrainIsoDiv
This repository is the current repository for our Jones et al. 2024 manuscript titled Long-read RNA sequencing identifies region- and sex-specific C57BL/6J mouse brain mRNA isoform expression and usage.
pipaber/TxDb.Carabica.NCBI
This is a TxDb package created for Coffea arabica (coffee).
sivkri/Deseq2-Annotated-Data-Processing
Filter DE genes based on log2Folchange, FDR value or both
sivkri/exon-bed-generator
Exon BED Generator: A script to download, process, and generate a BED file with exon coordinates for Homo sapiens from a GTF file
sivkri/rna-Seq-ScaledLengthTPM
To perform RNA-Seq data analysis and calculate length-scaled transcripts per million (TPM) values using the Salmon tool and the GenomicFeatures package in R.