bioconductor-package
There are 198 repositories under bioconductor-package topic.
saezlab/dorothea
R package to access DoRothEA's regulons
waldronlab/curatedMetagenomicData
Curated Metagenomic Data of the Human Microbiome
lima1/PureCN
Copy number calling and variant classification using targeted short read sequencing
hemberg-lab/SC3
A tool for the unsupervised clustering of cells from single cell RNA-Seq experiments
hemberg-lab/scmap
A tool for unsupervised projection of single cell RNA-seq data
Al-Murphy/MungeSumstats
Rapid standardisation and quality control of GWAS or QTL summary statistics
catavallejos/BASiCS
BASiCS: Bayesian Analysis of Single-Cell Sequencing Data. This is an unstable experimental version. Please see http://bioconductor.org/packages/BASiCS/ for the official release version
federicomarini/GeneTonic
Enjoy your transcriptomic data and analysis responsibly - like sipping a cocktail
drisso/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
waldronlab/MultiAssayExperiment
Bioconductor package for management of multi-assay data
Bioconductor/BiocParallel
Bioconductor facilities for parallel evaluation
Bioconductor/Biostrings
Efficient manipulation of biological strings
MarioniLab/DropletUtils
Clone of the Bioconductor repository for the DropletUtils package.
waldronlab/lefser
R implementation of the LEfSe method
Bioconductor/GenomicRanges
Representation and manipulation of genomic intervals
neurogenomics/orthogene
🧬 o r t h o g e n e 🧬✨✨✨✨✨✨✨ Interspecies gene mapping✨✨✨✨✨ 🦠 🔁 🌱 🔁 🌳 🔁 🍎 🔁 🍊 🔁 🪱 🔁 🪰 🔁 🐟 🔁 🦎 🔁 🐓 🔁 🦇 🔁 🐄 🔁 🐖 🔁 🐐 🔁 🐎 🔁 🐈 🔁 🐕 🔁 🐁 🔁 🐒 🔁 🦧 🔁 🦍 🔁 🏃♀️
MarioniLab/scran
Clone of the Bioconductor repository for the scran package.
waldronlab/curatedTCGAData
Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects
Bioconductor/SummarizedExperiment
A container (S4 class) for matrix-like assays
systemPipeR/systemPipeShiny
A Shiny framework for workflow management and data visualization
Bioconductor/GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
waldronlab/cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
UCLouvain-CBIO/depmap
Cancer Dependency Map package
Bioconductor/VariantAnnotation
Annotation of Genetic Variants
LTLA/basilisk
Clone of the Bioconductor repository for the basilisk package.
Bioconductor/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
waldronlab/TCGAutils
Toolbox package for organizing and working with TCGA data
Bioconductor/DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Bioconductor/GenomicFeatures
Query the gene models of a given organism/assembly
crisprVerse/crisprDesign
Comprehensive design of CRISPR gRNAs for nucleases and base editors
Bioconductor/IRanges
Foundation of integer range manipulation in Bioconductor
crisprVerse/crisprScore
On-Target and Off-Target Scoring Algorithms for CRISPR gRNAs
LTLA/batchelor
Clone of the Bioconductor repository for the batchelor package.
Bioconductor/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
neurogenomics/EpiCompare
Comparison, benchmarking & QC of epigenetic datasets
waldronlab/SingleCellMultiModal
Single Cell multimodal data scripts for downloading datasets