waldronlab/cBioPortalData

Issues

• cBioPortalData() variable recognition failure within wrapper/mapply functions

  #77 opened 2 months ago by krlong68
  1

• An error occur when I use “cBioPortaldata”

  #78 opened 2 months ago by aaaaxiaoma
  1

• clinicalData() .cache, db_collect

  #76 opened a year ago by kmezhoud
  2

• API changes?

  #75 opened a year ago by denoqo
  5

• Data splitting error 'group length is 0 but data length > 0'

  #73 opened a year ago by darencard
  4

• Error in retrieving mutation data

  #74 opened a year ago by twohigjd
  2

• study Id not recognized in cBioPortalData function

  #72 opened a year ago by ZWael
  5

• Does the API provide download of variants?

  #66 opened a year ago by zhongguojie1998
  1

• how to use cBioPortalData molecularProfilesIds for all human genes

  #67 opened a year ago by GeorgiaTsagkogeorga
  4

• cbiodfci access

  #71 opened a year ago by BiotechPedro
  4

• Error using cBioportalData on Genie data

  #70 opened a year ago by ZWael
  4

• cBioDataPack() fails despite valid studyId

  #69 opened 2 years ago
  2

• brca_tcga_pan_can_atlas_2018 is failing with `cBioDataPack`

  #68 opened 2 years ago by mjsteinbaugh
  11

• Possible mistake in .isNonExp function causes files (CNA etc) to be loaded as metadata?

  #63 opened 2 years ago by SRodenburg
  4

• geneTable(cbio)

  #65 opened 2 years ago by afaissa
  1

• loadStudy error

  #64 opened 2 years ago by gadepallivs
  1

• pancan_pcawg_2020 and pan_origimed_2020

  #62 opened 2 years ago by mjsteinbaugh
  4

• Error trying to obtain mutation data with getDataByGenes

  #61 opened 2 years ago by sajo25
  1

• Can we make the download URL customizable?

  #59 opened 2 years ago by SRodenburg
  2

• cBioPortalData did not work in custom function

  #58 opened 2 years ago by hufanglq
  1

• how to get molecularData with out entrezGeneIds

  #57 opened 2 years ago by limbo1996
  3

• Unable to import: ... missing value where TRUE/FALSE needed

  #60 opened 2 years ago by BiotechPedro
  3

• migrate from cgdsr to cBioPortalData

  #52 opened 3 years ago by kmezhoud
  4

• How to handle using API token

  #17 opened 3 years ago by inodb
  12

• compatibility with paediatric cBio?

  #49 opened 3 years ago by andrea-de-micheli
  3

• MAE object missing gene expression data

  #50 opened 3 years ago by varsha090597
  4

• fix cBioDataPack("brca_mbcproject_wagle_2017")

  #40 opened 3 years ago by LiNk-NY
  1

• Require R>4.2.0?

  #46 opened 3 years ago by Jeff-Gui
  1

• add argument for to disable .check_study_id_building for alt hostnames

  #47 opened 3 years ago by LiNk-NY
  0

• Creating Python client using bravado results in ValidationErrors

  #45 opened 3 years ago by tdeboer-ilmn
  2

• Add CI test for manuscript

  #20 opened 3 years ago by inodb
  3

• No lock availabe !

  #44 opened 3 years ago by ZheFrench
  0

• clinicalData does not retrieve all patient data

  #43 opened 4 years ago by afaissa
  2

• clinicalData does not retrieve all patient data

  #42 opened 4 years ago by afaissa
  3

• There is an error in the JSON format of the request payload - R api wrapper

  #41 opened 4 years ago by jjgao
  2

• prioritization request for angs_project_painter_2018

  #32 opened 4 years ago by lwaldron
  2

• expand vignettes

  #38 opened 4 years ago by lwaldron
  0

• Importing without a gene panel?

  #24 opened 4 years ago by jucor
  10

• Error in .checkBarcodes(barcodes) : Barcodes must start with 'TCGA'

  #36 opened 4 years ago by sahilseth
  3

• Fusion data unlisted in metadata

  #37 opened 4 years ago by LiNk-NY
  0

• cbio <- cBioPortal() does not work

  #35 opened 4 years ago by ryao-mdanderson
  10

• can't find 'VITAL_STATUS' field in mae clinicalData

  #34 opened 4 years ago by biodancerwangzhi
  2

• cBioDataPack Error for cesc_tcga_pan_can_atlas_2018

  #28 opened 4 years ago by jebard
  4

• Working example error

  #31 opened 4 years ago by mjsteinbaugh
  9

• molecularData with hugoGeneSymbol?

  #30 opened 4 years ago by xinwei-sher
  6

• geneTable()

  #29 opened 4 years ago by xinwei-sher
  1

• cBioDataPack("coadread_genentech") error

  #25 opened 4 years ago by jucor
  0

• cBioPortalData functions

  #15 opened 5 years ago by allteaser
  8

• Error: Provide a valid 'studyId' from 'getStudies()'

  #19 opened 5 years ago by jcgu
  2

• Problem in clinicalData function in For loops

  #18 opened 5 years ago by canholyavkin
  6