inodb

Cancer Data Visualization @cBioPortal @genome-nexus @mskcc

@cBioPortal @genome-nexus @mskcc Brooklyn, NY

Pinned Repositories

cbioportal
cBioPortal for Cancer Genomics
Language:Java568 53 6k435
cbioportal-frontend
React Frontend of cBioPortal :tada:
Language:TypeScript95 23 0234
genome-nexus
Backend server for Genome Nexus
Language:Java39 12 43440
genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
Language:Java7 10 6526
2014-5-metagenomics-workshop
Metagenomics Workshop 2014-5-21 to 2014-5-23 at SciLifeLab, Stockholm
Language:Python18 6 056
gnu-make-job-scheduler
A library for GNU make to schedule rules as jobs with qsub or sbatch
Language:Shell11 4 14
revmut
REVertant MUTation Find & Verify
Language:Python0 2 112
snakemake-parallel-bwa
A Snakefile to parallelize bwa.
Language:Python13 2 16
snakemake-workflows
An experimental repo for common snakemake rules and workflows
Language:Python46 11 215
sufam
Super sensitive mutation validator, uses sam/bam and vcf
Language:Python7 1 134

inodb's Repositories

inodb/sufam
Super sensitive mutation validator, uses sam/bam and vcf
Language:Python7 1 134
inodb/cyftools
CLI tools for CyCIF
Language:C++1 1 0
inodb/genome-nexus-annotation-pipeline
Library and tool for annotating MAF files using Genome Nexus Webserver API
Language:Java1 2 0
inodb/cbioportal
Language:JavaScript0 2 01
inodb/cbioportal-frontend
Language:TypeScript0 2 00
inodb/genome-nexus
REST API for Annotation and Interpretation of Genetic Variants in Cancer
Language:Java0 2 00
inodb/alexsigaras
About section for Alexandros Sigaras
1 0
inodb/annotation-tools
tools to allow annotation of vcf and maf files from a number of centers and merging the results
Language:Python2 0
inodb/cbioportal-docker-compose
Run cBioPortal using Docker Compose
Language:Shell2 0
inodb/cbioportal-frontend-archive-1
Archived version of cbioportal-frontend before rewriting history to remove large objects
Language:TypeScript2 0
inodb/cBioPortalData
Integrate the cancer genomics portal, cBioPortal, using MultiAssayExperiment
Language:R2 0
inodb/cbioportalR
R package to wrap cBioPortal's API to pull data from public or private cBioPortal databases
Language:R1 0
inodb/codenames
Play codenames online
Language:TypeScript2 0
inodb/datahub
A centralized location for storing curated data ready for inclusion in cBioPortal.
Language:HTML2 01
inodb/dotfiles
Dotfiles I use. Most of it is ripped from other people. Unfortunately I forgot the original source in some cases. Notify me if you want credits.
Language:Shell1 0
inodb/genome-nexus-frontend
Frontend for Genome Nexus :tada: (alpha)
Language:TypeScript2 0
inodb/genome-nexus-importer
Import data into MongoDB for use by https://github.com/genome-nexus/genome-nexus/
Language:Python2 0
inodb/hdash
Command line tool for generating HTAN dashboard.
Language:Python1 0
inodb/hotspots
Identifying recurrent mutations in cancer
inodb/hsim
Command line tool for generating simulated HTAN metadata for the HTAN Data Portal.
Language:Python2 0
inodb/htan-artist
A NextFlow pipeline to run image rendering process to generate resources for the HTAN Portal.
Language:Nextflow1 0
inodb/HTAN-Data-Ingress-Docs
A draft of the HTAN dataset ingress workflow - to share with tester teams and early adopters.
1 0
inodb/ino.bio
My personal blog
Language:JavaScript3 0
inodb/inodb
Github profile
2 0
inodb/jsii
jsii allows code in any language to naturally interact with JavaScript classes. It is the technology that enables the AWS Cloud Development Kit to deliver polyglot libraries from a single codebase!
Language:TypeScript0 0
inodb/minerva-lib-python
Minerva Python Library
Language:Python1 0
inodb/oncokbR
Annotate mutation, copy number alteration and structural variant data in R using oncoKB Annotation API
Language:R1 0
inodb/schematic
Package for biomedical data model and data ingress management
Language:Python0 0
inodb/shpe
Language:JavaScript1 0
inodb/test-codespaces
Language:EJS2 0