waldronlab/TCGAutils

Issues

• Inquiry Regarding TCGA Barcode Identification with TCGAutils

  #34 opened a year ago by Sarigenes
  3

• Apparent Incompleteness of Subtypes

  #33 opened 2 years ago by DarioS
  1

• getSubtypeMap Returns Invalid Column Names

  #32 opened 2 years ago by DarioS
  2

• UUIDtoBarcode not recognising file_id after R update

  #31 opened 3 years ago by JuliaArizanova
  3

• mapping between case id and protein expression file id

  #30 opened 3 years ago by eajeong
  2

• UUIDtoBarcode

  #29 opened 3 years ago by SerifatAdebola
  8

• Filename Conversion to TCGA ID Incorrect

  #22 opened 5 years ago by DarioS
  8

• document OncoPrint in vignette and cheatsheet

  #27 opened 5 years ago by lwaldron
  2

• mergeColData location in vignette

  #28 opened 5 years ago by lwaldron
  0

• UUIDtoBarcode Returns Only One Record

  #26 opened 5 years ago by DarioS
  4

• Exposed Slack Webhook

  #25 opened 5 years ago by gitty8
  1

• UUIDtoBarcode returning subset of output

  #24 opened 5 years ago by LiNk-NY
  1

• Error if UUIDs from Copy Number File

  #23 opened 6 years ago by DarioS
  2

• splitAssays error for LAML

  #18 opened 6 years ago by lgeistlinger
  7

• systematic colData trimming

  #19 opened 6 years ago by lwaldron
  3

• barcodeToUUID error: EXPR must be a length 1 vector

  #14 opened 6 years ago by lwaldron
  1

• barcodeToUUID error: arguments imply differing number of rows

  #13 opened 6 years ago by lwaldron
  2

• symbolsToRanges: optionally drop unmapped

  #20 opened 6 years ago by lgeistlinger
  1

• qreduceTCGA

  #21 opened 6 years ago by LiNk-NY
  0

• TCGAsampleselect when sampleCode has length > 1

  #16 opened 6 years ago by lwaldron
  0

• incorrect argument matching

  #15 opened 6 years ago by lwaldron
  1

• UUIDtoBarcode returns <0 rows> (or 0-length row.names)

  #17 opened 6 years ago by jorisvdhaar
  2

• splitAssays(acc, sampleCodes = c("01", "10", "11")) fails

  #12 opened 6 years ago by lwaldron
  1

• extract from ID case the ID files

  #10 opened 7 years ago by bioinfo-dirty-jobs
  3

• Installation on R 3.4.0

  #11 opened 7 years ago by asmagen
  1

• TCGAtranslateID not working?

  #8 opened 7 years ago by simomounir
  2

• getBroadSubtypes

  #6 opened 7 years ago by lgeistlinger
  1

• gistic2RangedSummarizedExperiment

  #7 opened 7 years ago by lgeistlinger
  2

• depends on RTCGAToolbox 2.7.5 -- cannot find!

  #5 opened 7 years ago by vjcitn
  4

• TCGAtranslateID not working?

  #4 opened 8 years ago by lwaldron
  7

• Update News file to match commits

  #2 opened 8 years ago by LiNk-NY
  2

• XML dependency not working for HPC

  #3 opened 8 years ago by LiNk-NY
  0

• Rename package to `BiocInterfaces`

  #1 opened 9 years ago by LiNk-NY
  0