asmagen

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

CancerApp

Web portal for browsing predicted gene interactions defined by EnGIne (Encyclopedia of Genetic Interactions)

EncyclopediaGeneticInteractions

hierarchicalSingleCell

An R package to robustly identify subpopulations in single-cell RNASeq data.

magen

magenbio

MagenSingleCell

martin_et_al_cell_2019

Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"

robustSingleCell

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

SPAGEfinder

Computational approach to identify Survival associated Pairwise Gene Expression states.

asmagen/robustSingleCell

Robust single cell clustering and comparison of population compositions across tissues and experimental models via similarity analysis.

asmagen/SPAGEfinder

Computational approach to identify Survival associated Pairwise Gene Expression states.

asmagen/hierarchicalSingleCell

An R package to robustly identify subpopulations in single-cell RNASeq data.

asmagen/awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

asmagen/CancerApp

Web portal for browsing predicted gene interactions defined by EnGIne (Encyclopedia of Genetic Interactions)

asmagen/EncyclopediaGeneticInteractions

asmagen/magen

asmagen/magenbio

asmagen/MagenSingleCell

asmagen/martin_et_al_cell_2019

Scripts and data files used to generate the figures of the Crohn's single-cell RNA-seq paper "Single-cell analysis of Crohn’s disease lesions identifies a pathogenic cellular module associated with resistance to anti-TNF therapy"

asmagen/nature-med-2023

asmagen/notebook_whisperer

An LLM-based coding assistant to help with the construction of Jupyter notebooks

asmagen/SC-UsersGroup

Info about NIH-IRP Single Cell Users Group events

asmagen/seq

asmagen/SPAGEPortal

asmagen/starter-hugo-academic

asmagen/visium-clustergrammer2