asmagen/robustSingleCell

Issues

• Getting errors from the tutorial.

  #37 opened 4 years ago by ssun12
  2

• Error in read.preclustered.datasets(pooled_env) : Feature genes mismatch - need to correct dataset binding matching

  #36 opened 4 years ago by zhaoliyang0429
  2

• is there any way to convert expression data matrix to a robustSingleCell object for analysis?

  #35 opened 4 years ago by yulijia
  0

• Issue 12

  #33 opened 5 years ago by asmagen
  0

• Issue 1211

  #32 opened 5 years ago by asmagen
  0

• Issue with read.data

  #30 opened 6 years ago by asmagen
  4

• load.cluster.names not exported

  #31 opened 6 years ago by asmagen
  0

• Pdf canvas size is not adjusted properly

  #29 opened 6 years ago by asmagen
  0

• Filter data issue

  #27 opened 6 years ago by asmagen
  0

• Outputs to user interface

  #26 opened 6 years ago by asmagen
  0

• PCA gene signature activation regress functionality bug

  #24 opened 6 years ago by asmagen
  0

• Figure margins errors

  #25 opened 6 years ago by asmagen
  0

• margins are hard coded in visualize.cluster.cors.heatmaps

  #18 opened 6 years ago by asmagen
  4

• cluster.analysis output missing

  #22 opened 6 years ago by asmagen
  0

• read.preclustered.datasets: bug with the experiments variable

  #23 opened 6 years ago by asmagen
  1

• Rerunning read.precluster.data changed attribute size

  #21 opened 6 years ago by Mamie
  0

• Waiting for tSNE slurm output in summarize

  #20 opened 6 years ago by asmagen
  1

• union.genes.filter call in read.preclustered.datasets

  #19 opened 6 years ago by asmagen
  1

• check_not_slurm is called unnecessarily in function that don't use rslurm

  #16 opened 6 years ago by asmagen
  3

• compare.cluster.similarity undefined

  #14 opened 6 years ago by asmagen
  3

• run_tSNE fails on big datasets

  #13 opened 6 years ago by asmagen
  3

• plot.simple.heatmap not exported

  #12 opened 6 years ago by asmagen
  3

• Add marker discovery functionality as described in original publication.

  #1 opened 6 years ago by asmagen
  2

• Add marker visualizations

  #3 opened 6 years ago by asmagen
  2

• filter.cluster.data/filter.data functions not exported

  #10 opened 6 years ago by asmagen
  1

• Bug in read.preclustered.datasets

  #15 opened 6 years ago by asmagen
  1

• Printing to console (e.g. print, str) stops working after running ribosomal.score(LCMV1)

  #11 opened 6 years ago by nrachman
  3

• check rslurm function prints 'SLURM not detected' even when slum is detected

  #9 opened 6 years ago by asmagen
  3

• Clean up open file connection after function throw an error

  #8 opened 6 years ago by Mamie
  1

• Failing to read data after changing input parameter

  #7 opened 6 years ago by asmagen
  1

• GitHub.io

  #2 opened 6 years ago by asmagen
  1