Pinned Repositories
bcbio-nextgen
Validated, scalable, community developed variant calling, RNA-seq and small RNA analysis
jbrowse
slowkow's personal branch of A modern genome browser in JavaScript
master_course
tutorial
mutsig_workflow
ga4gh, oncotator, mutsig
ngs-filters
Filters for false-positive mutation calls in NGS
NGSBASE
Tutorial test
orchid
A novel management, annotation, and machine learning framework for analyzing cancer mutations
pirateplotr
[project] ushahidi project mgmt gantt for pirates to plot projects
rna-seq-star-deseq2
Thebasics
https://bioinfo-dirty-jobs.github.io/Thebasics/
bioinfo-dirty-jobs's Repositories
bioinfo-dirty-jobs/rna-seq-star-deseq2
bioinfo-dirty-jobs/3d-deep-learning
3D Deep Learning works
bioinfo-dirty-jobs/3D-ResNets-PyTorch
3D ResNets for Action Recognition (CVPR 2018)
bioinfo-dirty-jobs/alignment-and-variant-calling-tutorial
basic walk-throughs for alignment and variant calling from NGS sequencing data
bioinfo-dirty-jobs/ANTs
Advanced Normalization Tools (ANTs)
bioinfo-dirty-jobs/Attention-Gated-Networks
Use of Attention Gates in a Convolutional Neural Network / Medical Image Classification and Segmentation
bioinfo-dirty-jobs/Brain-Tumor-Detection-and-Segmentation-using-Deep-Learning
This repo includes Glioma Segmentation with Mask R-CNN and U-Net.
bioinfo-dirty-jobs/BRAINSTools
A suite of tools for medical image processing focused on brain analysis
bioinfo-dirty-jobs/CDGnet
Repository for code related to the CDGnet tool for prioritizing targeted cancer therapies
bioinfo-dirty-jobs/DarcSign
DNA repair classification signatures: Using XGBoost models to classify DNA repair defects from liquid biopsy sequencing.
bioinfo-dirty-jobs/Data-Augmentation-and-Segmentation-with-GANs-for-Medical-Images
Generating randomized brain MRI images from random noise using a GAN. Additionally translating from one image domain to another with a conditional GAN (pix2pix): Segmenting brain anatomy - Generating brain MRI from the segmentation - Augmenting the translation of image modalities in a limited dataset to perform ischemic stroke segmentation.
bioinfo-dirty-jobs/deepmedic
Efficient Multi-Scale 3D Convolutional Neural Network for Segmentation of 3D Medical Scans
bioinfo-dirty-jobs/Fetal-MRI-Segmentation
Total Body and Brain 3D Segmentation in Fetal MRI scans
bioinfo-dirty-jobs/gbm_immune_validation
Validating glioblastoma immune cell immunohistochemsitry using computational deconvolution of TCGA tumors
bioinfo-dirty-jobs/GLASS
GLASS consortium
bioinfo-dirty-jobs/Immuno_notes
Immunology-related bioinformatics data and tools
bioinfo-dirty-jobs/machine_learning_examples
A collection of machine learning examples and tutorials.
bioinfo-dirty-jobs/minetorch
Build deep learning applications in a new and easy way.
bioinfo-dirty-jobs/mrnet
Implementation of the paper: Deep-learning-assisted diagnosis for knee magnetic resonance imaging: Development and retrospective validation of MRNet
bioinfo-dirty-jobs/NiftyNet
An open-source convolutional neural networks platform for research in medical image analysis and image-guided therapy
bioinfo-dirty-jobs/pancancer
Building classifiers using cancer transcriptomes across 33 different cancer-types
bioinfo-dirty-jobs/PharmCAT
The Pharmacogenomic Clinical Annotation Tool
bioinfo-dirty-jobs/Practical1
bioinfo-dirty-jobs/pytorch-3dunet
3D U-Net model for volumetric semantic segmentation written in pytorch
bioinfo-dirty-jobs/pytorch_study
bioinfo-dirty-jobs/rana2
Notes on Rna-seq analisys procedure
bioinfo-dirty-jobs/rna2020
Trascriptomics course
bioinfo-dirty-jobs/shiny-iatlas
An interactive web portal for exploring immuno-oncology data
bioinfo-dirty-jobs/test_mou
Test
bioinfo-dirty-jobs/variant_tutorial
Course material for the genetic variant calling tutorial at ILRI Ethiopia