drisso/SingleCellExperiment

Issues

• Methods for splitting SingleCellExperiment objects

  #55 opened 4 years ago by jma1991
  5

• [advice] adding new datasets to a reference dataset

  #76 opened 4 months ago by cstrlln
  2

• SingleCellExperiement and Seurat V5

  #77 opened 4 months ago by ondina-draia
  5

• Mistake Locks R Terminal

  #75 opened 8 months ago by DarioS
  1

• cannot convert DelayedMatrix format for big sce object

  #72 opened 9 months ago by Marwansha
  1

• `colPairs(x, asSparse = TRUE)` fails when there are no metadata columns

  #73 opened 8 months ago by lazappi
  5

• How to install the old version?

  #71 opened 10 months ago by mainyanghr
  1

• Special field for gene symbols

  #70 opened a year ago by lambdamoses
  3

• Error when making a class inheriting from SingleClassExperiment

  #69 opened 2 years ago by HarkiratSohi
  8

• Interaction between SingleCellExperiment and tictoc packages?

  #67 opened 2 years ago by brgew
  3

• Internal error in constructor when sample/feature name is NA

  #66 opened 2 years ago by TuomasBorman
  3

• version field duplicated in int_metadata after concatenating two SCE objects

  #65 opened 3 years ago by lambdamoses
  4

• error when using assay()

  #64 opened 3 years ago by FionaMoon
  1

• Error in rowData(object)

  #27 opened 6 years ago by ONeillMB1
  5

• `combineCols()` errors when called via `do.call()` with a named list of objects to be combined

  #62 opened 3 years ago by PeteHaitch
  5

• Coercion from *SingleCellExperiment* to *SummarizedExperiment* loses rownames

  #63 opened 3 years ago by PeteHaitch
  1

• Slow load time of package

  #61 opened 3 years ago by alexvpickering
  2

• logNormcounts() function doesn't work for my singlecellExperiment object

  #59 opened 4 years ago by tf1993614
  11

• Double validation of the int_elementMetadata slot

  #56 opened 4 years ago by hpages
  6

• Modify behavior of withColData= in altExp(s)

  #58 opened 4 years ago by LTLA
  1

• Respecting any mcols() passed to reducedDims<-() if a List is supplied as the value

  #57 opened 4 years ago by brgew
  4

• SCE-internals man page

  #54 opened 4 years ago by FelixErnst
  4

• Hierarchical clustering dendrogram

  #52 opened 5 years ago by atflores
  1

• Remove non-used slots

  #51 opened 5 years ago by jgarces02
  2

• SCE class allows assigning a SCE as assay?

  #50 opened 5 years ago by HelenaLC
  7

• Segregation according to gene name

  #48 opened 5 years ago by Hemantcnaik
  2

• int_colData method not found

  #49 opened 5 years ago by drighelli
  2

• could not find function "colLabels"

  #47 opened 5 years ago by suvarzz
  1

• Rownames stripped when using `reducedDims<-`

  #46 opened 5 years ago by LiNk-NY
  2

• cbind() hangs if assays don't match

  #44 opened 5 years ago by nathancfox
  5

• Change in reducedDims slot in Bioc 10?

  #43 opened 5 years ago by hpliner
  4

• Add tests for altExp error messages

  #38 opened 5 years ago by LTLA
  4

• could not find function "altExp<-"

  #39 opened 5 years ago
  4

• updateObject for classes that inherit from SingleCellExperiment has problem with reducedDims slot change

  #37 opened 5 years ago by epurdom
  2

• Joining `sce` objects (extension to `cbind`)

  #29 opened 5 years ago by robertamezquita
  1

• Printing is suddenly slow?

  #31 opened 5 years ago by LTLA
  10

• Secondary objects for alternative feature types

  #30 opened 5 years ago by LTLA
  8

• Is there any R package supporting DotPlot() for SingleCellExperiment object?

  #28 opened 6 years ago by genecell
  3

• Provide `as.matrix` S3 method

  #26 opened 6 years ago by scottgigante
  8

• don’t use “Depends”

  #25 opened 6 years ago by flying-sheep
  14

• weights accessor

  #23 opened 6 years ago by dcellwanger
  3

• Extracting counts data as dataframe

  #22 opened 6 years ago by DrLucyMac
  4

• Test fails in Travis but not on my local machine

  #21 opened 6 years ago by drisso
  2

• Lack of withNames argument to counts(), tpm(), etc.

  #19 opened 6 years ago by PeteHaitch
  2

• Make subset() behave more expected

  #17 opened 6 years ago by flying-sheep
  2

• Requires R version >=3.5

  #11 opened 7 years ago by siamakz
  3

• Suggest providing a `as` function for matrices or data.frame

  #10 opened 7 years ago by epurdom
  3

• Saving a SingleCellExperiment containing a dgCMatrix with "saveHDF5SummarizedExperiment"

  #9 opened 7 years ago by chriad
  1

• Markdown specific error for SingleCellExperiment signature when using plotPCA

  #8 opened 7 years ago by campsj
  8

• Error creating SingleCellExperiment object

  #7 opened 7 years ago by campsj
  5