Pinned Repositories
bsseq
Devel repository for bsseq
BioC2020_DelayedArray_workshop
Workshop on effectively using the DelayedArray framework to support the analysis of large datasets
bwa-parclip
An experimental hack of bwa-meth to align PAR-CLIP reads
DelayedMatrixStats
A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
DSArray
Compressed In-Memory Representation of 3-Dimensional Arrays That Contain Many Duplicate Slices
fstArray
Leveraging 'fst' for fast on-disk matrices
GenomicTuples
Representation and Manipulation of Genomic Tuples in R
methtuple
methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.
phd_thesis
My PhD thesis
PeteHaitch's Repositories
PeteHaitch/DelayedMatrixStats
A port of the matrixStats API to work with DelayedMatrix objects from the DelayedArray package
PeteHaitch/methtuple
methtuple is a methylation caller for methylation events that co-occur on the same DNA fragment from high-throughput bisulfite sequencing data, such as methylC-seq.
PeteHaitch/BioC2020_DelayedArray_workshop
Workshop on effectively using the DelayedArray framework to support the analysis of large datasets
PeteHaitch/GenomicTuples
Representation and Manipulation of Genomic Tuples in R
PeteHaitch/MethylSeqData
Collection of Public DNA Methylation Sequencing Datasets
PeteHaitch/paper-summaries
Summaries of papers I done read
PeteHaitch/personal_website
PeteHaitch/alevinQC
Create QC and summary reports for Alevin output
PeteHaitch/atena
Analysis of transposable elements
PeteHaitch/BGI_vs_Illumina_Benchmark
This repository contains code related to the publication "Comparative performance of the BGI and Illumina sequencing technology for single-cell RNA-sequencing" by Senabouth et al.
PeteHaitch/BioC2021_DelayedArray_workshop
About Workshop on effectively using the DelayedArray framework to support the analysis of large datasets
PeteHaitch/bioconductor-teaching
Bioconductor teaching working group
PeteHaitch/bioimagebook.github.io
An introduction to bioimage analysis - http://bioimagebook.github.io
PeteHaitch/bsseq
Devel repository for bsseq
PeteHaitch/fgbio
Tools for working with genomic and high throughput sequencing data.
PeteHaitch/iSEE
R/shiny interface for interactive visualization of data in SummarizedExperiment objects
PeteHaitch/kana
Single cell analysis in the browser
PeteHaitch/large-scale-data-base
Base Rmd files for Orchestrating Large-Scale Data Analysis in Bioconducotr
PeteHaitch/making_bioconductor_pkg
PeteHaitch/MicrobiotaProcessWorkshop
The workshop of microbiome datasets analysis using MicrobiotaProcess
PeteHaitch/PRONE
R Package for preprocessing, normalizing, and analyzing proteomics data
PeteHaitch/RBioFormats
:books: R interface to the Bio-Formats library
PeteHaitch/redis
Redis is an in-memory database that persists on disk. The data model is key-value, but many different kind of values are supported: Strings, Lists, Sets, Sorted Sets, Hashes, Streams, HyperLogLogs, Bitmaps.
PeteHaitch/renv_example
PeteHaitch/rprimer
PeteHaitch/scater
Clone of the Bioconductor repository for the scater package.
PeteHaitch/scRNA-seq-workshop
single cell RNA-seq analysis workshop
PeteHaitch/scuttle
Clone of the Bioconductor repository for the scuttle package.
PeteHaitch/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
PeteHaitch/SingleR
Clone of the Bioconductor repository for the SingleR package.