jgarces02
Research Scholar at Memorial Sloan Kettering Cancer Center (Myeloma Service + Shah's computational lab)
New York
Pinned Repositories
jgarces02's Repositories
jgarces02/annovar
Annovar scripts (with some hand-made utilities!)
jgarces02/customization
Some miscellaneous config files...
jgarces02/varscan_addings
Some additional scripts for varscan caller
jgarces02/Awesome-CancerEvolution
jgarces02/awesome-deepbio
A curated list of awesome deep learning applications in the field of computational biology
jgarces02/awesome-public-datasets
A topic-centric list of HQ open datasets.
jgarces02/awesome-single-cell
List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.
jgarces02/clonalEvolution_repos
Some software about clonal evolution (to test!)
jgarces02/dataviz
A book covering the fundamentals of data visualization.
jgarces02/EMT_score_calculation
jgarces02/FlowCT
FlowCT package
jgarces02/GEO-data-download
Code to download microarray data from the GEO database given the GSE and GPL ids.
jgarces02/GuanRank-R
(unofficial version)
jgarces02/misc-tools
jgarces02/onboarding
jgarces02/PTCL
Peripheral T-cell Non-Hodgkin Lymphoma classification
jgarces02/python_data_science_master_unav
Repositorio para almancenar los contenidos del master Python Data Science de la UNAV, principalmente todo lo relacionado con Python, Jupyter y Docker.
jgarces02/rnaseq_tutorial
Informatics for RNA-seq: A web resource for analysis on the cloud. Educational tutorials and working pipelines for RNA-seq analysis including an introduction to: cloud computing, critical file formats, reference genomes, gene annotation, expression, differential expression, alternative splicing, data visualization, and interpretation.
jgarces02/single-cell-pseudotime
An overview of algorithms for estimating pseudotime in single-cell RNA-seq data
jgarces02/smart-variant-filtering
jgarces02/strelka
Strelka2 germline and somatic small variant caller
jgarces02/svviz2
for visual evaluation of read support for structural variation
jgarces02/VBAmacros_Excel
jgarces02/VCF-Simplify
A python parser to simplify and build the VCF (Variant Call Format).