jgarces02

jgarces02's Stars

• DMCDS/CART_NRM_Metaanalysis

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• hw538/cfDNAPro

  cfDNAPro specializes in standardized and robust cfDNA fragmentomic analysis

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• elakatos/liquidCNA

  R implementation of liquidCNA, a method for tracking emergent subclone dynamics in CNA data from longitudinal (liquid) biopsies

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• Teichlab/scg_lib_structs

  Collections of library structure and sequence of popular single cell genomic methods

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• teunbrand/ggh4x

  ggplot extension: options for tailored facets, multiple colourscales and miscellaneous

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• ccbiolab/svpluscnv

  Integrative analysis of complex structural variants

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• UM-Myeloma-Genomics/mol_time

  R function for calculating the timing of DNA aberration events from NGS data.

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• PoisonAlien/maftools

  Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.

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• everestial/VCF-Simplify

  A python parser to simplify and build the VCF (Variant Call Format).

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• zhanghao-njmu/SCP

  An end-to-end Single-Cell Pipeline designed to facilitate comprehensive analysis and exploration of single-cell data.

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• angelettilab/scMouseBcellFlu

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• robertmartin8/KindleClippings

  Extract kindle highlights into organised text files

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• eyalsim/LCV

  Implementation of the LCV method for quantifying gene expression variability

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• casanova-lab/iMUBAC

  Integration of multi-batch cytometry datasets

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• tgen/MMRF_CoMMpass

  A collection of scripts used to recreate files and graphs used in the MMRF CoMMpass analysis.

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• immunomind/immunarch

  🧬 Immunarch: an R Package for Fast and Painless Exploration of Single-cell and Bulk T-cell/Antibody Immune Repertoires

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• bioinformatist/CrossICC

  An Interactive Consensus Clustering framework for Cross-platform data analysis

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• stephenturner/covcalc

  Coverage / read count calculator for sequencing experiments

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• gustaveroussy/EaCoN

  Easy Copy Number !

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• skanmera/ExcelMerge

  GUI Diff Tool for Excel

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• splaisan/NGS-Variant-Analysis-and-coverage-depth

  Subsample a large Drosophila dataset to measure the effect of coverage depth on variant calls

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• IARCbioinfo/needlestack

  Multi-sample somatic variant caller

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• ekg/alignment-and-variant-calling-tutorial

  basic walk-throughs for alignment and variant calling from NGS sequencing data

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• agitter/single-cell-pseudotime

  An overview of algorithms for estimating pseudotime in single-cell RNA-seq data

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• seandavi/awesome-single-cell

  Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.

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