Pinned Repositories
binf-scripts
A collection of useful bioinformatics scripts.
clamour
An R package for setting up a website to display analysis of Twitter hashtags
clustree
Visualise Clusterings at Different Resolutions
cookiecutter-r-analysis
Cookiecutter template for an R analysis project
phd-commits
Functions for scraping git commits from repositories associated with a PhD (or anything else) and plotting them.
phd-thesis
My PhD thesis - "Tools and techniques for single-cell RNA sequencing data"
phd-thesis-analysis
Code for the analysis chapter of my PhD thesis looking at kidney organoid scRNA-seq data
unimelbdown
An updated R Markdown thesis template using the bookdown package
splatter
Simple simulation of single-cell RNA sequencing data
scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
lazappi's Repositories
lazappi/clustree
Visualise Clusterings at Different Resolutions
lazappi/clamour
An R package for setting up a website to display analysis of Twitter hashtags
lazappi/doilinker
Link Preprints And Publications By DOI
lazappi/scRNA-tools
Table of software for the analysis of single-cell RNA-seq data.
lazappi/lazappi
My GitHub profile README
lazappi/separate_rmarkdown_navbar
Separate HTML navbar for R Markdown websites
lazappi/ssummary
A shell script for summarising SLURM queues
lazappi/twitter-stats
Analysis of Twitter hashtags
lazappi/lazappi.id.au
My personal website
lazappi/openproblems
Formalizing and benchmarking open problems in single-cell genomics
lazappi/tidydirectory
A Python script for tidying directories
lazappi/biobox
🌱📦 A collection of bioinformatics tools for working with sequence data.
lazappi/BiocStickers
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
lazappi/chezmoi-dotfiles
Dotfiles repository for use with chezmoi
lazappi/funkyheatmap
Visualising data frames as funky heatmaps 📊
lazappi/gh-dashboard
Dashboard showing the status of my main GitHub repos, based on https://github.com/gadenbuie/status.
lazappi/lamin-test
Testing of Lamin
lazappi/laminr
Lamin's R SDK.
lazappi/lazappi.r-universe.dev
R universe config
lazappi/nf-core_rnaseq
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
lazappi/oecd-housing
Some basic analysis of housing statistics from the OECD
lazappi/openapi-generator
OpenAPI Generator allows generation of API client libraries (SDK generation), server stubs, documentation and configuration automatically given an OpenAPI Spec (v2, v3)
lazappi/scanpy
Single-Cell Analysis in Python. Scales to >1M cells.
lazappi/SingleCellExperiment
Clone of the Bioconductor repository for the SingleCellExperiment package, see https://bioconductor.org/packages/devel/bioc/html/SingleCellExperiment.html for the official development version.
lazappi/staged-recipes
A place to submit conda recipes before they become fully fledged conda-forge feedstocks
lazappi/task_batch_integration
lazappi/task_dimensionality_reduction
lazappi/task_dimensionality_reduction_copy
A copy of the dimensionality reduction task for testing
lazappi/task_template
This repo is a template to create a new task that has the correct files and structure needed to start a new task.
lazappi/website
Website hosted at https://openproblems.bio