Bioconductor/IRanges

Issues

• `grepl` isn't working correctly for `CharacterList` with `ignore.case` and `fixed` enabled

  #51 opened 9 months ago by mjsteinbaugh
  2

• Reverse IRangesList

  #50 opened a year ago by tbrittoborges
  3

• Support 'compress=NA' in AtomicList constructors

  #48 opened a year ago by hpages
  0

• Some methods expect no more than 2^31 elements

  #43 opened 3 years ago by ssayols
  7

• Fix for slidingIRanges function

  #47 opened 2 years ago by AxelRosendahlHuber
  0

• Missing overlaps with type='start' or type='end' in findOverlaps

  #46 opened 2 years ago by jakob-wirbel
  2

• Unfortunately indecipherable C error on install

  #45 opened 2 years ago by mollysrour
  1

• Subsetting a SimpleRleList object by a GRanges object 'x' should work, even when 'sum(width(x))' >= 2^31

  #44 opened 3 years ago by hpages
  0

• Accidental issue

  #42 opened 3 years ago by alexandra-wall
  1

• Consistency between between base Math Ops and S4Vectors for IntegerLists

  #41 opened 3 years ago by sa-lee
  4

• Recent change to unsplit() method for List objects breaks many packages

  #40 opened 3 years ago by hpages
  4

• IRanges constructor with FactorLists

  #38 opened 3 years ago by sa-lee
  3

• `IRanges()` in devel doesn't work if `start` is a matrix

  #37 opened 3 years ago by PeteHaitch
  3

• Constructing a CompressedList given the PartitioningByEnd object?

  #36 opened 3 years ago by LTLA
  3

• Missing the "CompressedList,missing" method for Ops

  #28 opened 3 years ago by LTLA
  1

• mergeByOverlaps, findOverlapPairs etc don't work with only one range

  #35 opened 4 years ago by multimeric
  1

• no function found corresponding to methods exports from ‘IRanges’ for: ‘parallel_slot_names’

  #34 opened 4 years ago by TrumanZYX
  5

• quantile,AtomicList-method misbehaves for length(p)==1

  #33 opened 4 years ago by LTLA
  2

• Cannot install IRanges with BiocManager::install("IRanges")

  #32 opened 4 years ago by raphaelbetschart
  2

• Safely getting the column names of a CompressedSplitDFrameList

  #29 opened 4 years ago by LTLA
  2

• startsWith and endsWith are not exported

  #26 opened 4 years ago by LTLA
  2

• which.min() and which.max() are broken on CompressedNumericList objects

  #30 opened 4 years ago by hpages
  0

• unname does not work for SplitDFLists

  #25 opened 4 years ago by LTLA
  1

• Improving the CompressedList constructors

  #27 opened 4 years ago by LTLA
  4

• Best way of coercing a CompressedSplitDFrameList into a 1:1 mapping?

  #24 opened 4 years ago by LTLA
  1

• Bug in IRanges:::recycleListElements()

  #23 opened 4 years ago by hpages
  2

• function restrict() doesn't return expected result on continuous Iranges

  #22 opened 4 years ago by zyllifeworld
  2

• Add rescale() for IRanges objects

  #16 opened 5 years ago by hpages
  2

• Conversion of IRanges to data.frame strips metadata

  #8 opened 5 years ago by iimog
  3

• order(x, decreasing=TRUE) is broken on CompressedIntegerList objects

  #21 opened 5 years ago by hpages
  0

• Make the IRanges() constructor compatible with ALTREP

  #18 opened 5 years ago by hpages
  4

• version bump required

  #9 opened 5 years ago by FelixErnst
  1

• setdiff that doesn't reduce

  #14 opened 5 years ago by rcorty
  8

• propagate mcols() through setOps where possible

  #12 opened 5 years ago by rcorty
  6

• Making the CompressedList more widely usable

  #11 opened 5 years ago by LTLA
  4

• IRanges::IntegerList & min / max

  #5 opened 6 years ago by LiNk-NY
  6

• Wrong min/max on empty entries of CompressedIntegerLists

  #10 opened 5 years ago by LTLA
  3

• "[["/setListElement removes rownames on a CompressedSplitDataFrameList

  #6 opened 6 years ago by FelixErnst
  3

• Run Length Encoding vignette section is out of place

  #2 opened 7 years ago by lwaldron
  2

• Change to default minoverlap in subsetByOverlaps() feels unintuitive

  #1 opened 7 years ago by PeteHaitch
  15