Pinned Repositories
30-days
agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
ASCAT.sc
battenberg
Battenberg R package for subclonal copynumber estimation
BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
CaVEMan
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
clindet
A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
design-resource
A list of design resources.
ggpy
ggplot port for python
Gource
software version control visualization
zyllifeworld's Repositories
zyllifeworld/30-days
zyllifeworld/agmin
A comprehensive data mining and visualization framework for tabular aging features in clinical and omics assays.
zyllifeworld/ASCAT.sc
zyllifeworld/battenberg
Battenberg R package for subclonal copynumber estimation
zyllifeworld/BRASS
Breakpoints via assembly - Identifies breaks and attempts to assemble rearrangements in whole genome sequencing data.
zyllifeworld/CaVEMan
SNV expectation maximisation based mutation calling algorithm aimed at detecting somatic mutations in paired (tumour/normal) cancer samples. Supports both bam and cram format via htslib
zyllifeworld/clindet
A fully automated multi-omics data analysis pipeline based on Snakemake and singularity.
zyllifeworld/design-resource
A list of design resources.
zyllifeworld/ggpy
ggplot port for python
zyllifeworld/Gource
software version control visualization
zyllifeworld/homework_website
website code
zyllifeworld/maftools
Summarize, Analyze and Visualize MAF files from TCGA or in-house studies.
zyllifeworld/neuralart
An implementation of the paper 'A Neural Algorithm of Artistic Style'.
zyllifeworld/papershare
https://psclub.netlify.com/
zyllifeworld/plmc
Inference of couplings in proteins and RNAs from sequence variation
zyllifeworld/read.wos.R
functions to read data exported from Web of Science into R
zyllifeworld/ribosome-profiling-analysis-framework
Ribosome profiling analysis framework as described in de Klerk E., Fokkema I.F.A.C et al (2015). Alignment, triplet periodicity analysis, detecting ORFs.
zyllifeworld/Sirens_song
zyllifeworld/TRF2GFF
Convert Tandem Repeat Finder dat file output into gff3 format
zyllifeworld/zylblog
zyllifeworld/zyllifeworld
This repo stored the files of my blog