core-package
There are 88 repositories under core-package topic.
Bioconductor/BiocParallel
Bioconductor facilities for parallel evaluation
Bioconductor/Biostrings
Efficient manipulation of biological strings
Bioconductor/GoogleGenomics
[DEPRECATED] An R package for Google Genomics API queries.
Bioconductor/GenomicRanges
Representation and manipulation of genomic intervals
Bioconductor/GenomeInfoDb
Utilities for manipulating chromosome names, including modifying them to follow a particular naming style
Bioconductor/SummarizedExperiment
SummarizedExperiment container
Bioconductor/Rsamtools
Binary alignment (BAM), FASTA, variant call (BCF), and tabix file import
Bioconductor/GenomicFeatures
Conveniently import and query gene models
Bioconductor/DelayedArray
A unified framework for working transparently with on-disk and in-memory array-like datasets
Bioconductor/VariantAnnotation
Annotation of Genetic Variants
Bioconductor/IRanges
Foundation of integer range manipulation in Bioconductor
Bioconductor/S4Vectors
Foundation of vector-like and list-like containers in Bioconductor
Bioconductor/AnnotationHub
Client for the Bioconductor AnnotationHub web resource
Bioconductor/BiocFileCache
Manage Files Across Sessions
Bioconductor/BiocStyle
Issues and pull requests for BiocStyle should go here.
Bioconductor/MatrixGenerics
S4 Generic Summary Statistic Functions that Operate on Matrix-Like Objects
Bioconductor/BiocGenerics
Defines many S4 generic functions used in Bioconductor
Bioconductor/HDF5Array
HDF5 backend for DelayedArray objects
Bioconductor/Rhtslib
HTSlib high-throughput sequencing library as an R package
Bioconductor/ExperimentHub
Client to access ExperimentHub resources
Bioconductor/AnnotationDbi
Manipulation of SQLite-based annotations in Bioconductor
Bioconductor/Biobase
Biobase: Base functions for Bioconductor
Bioconductor/BSgenome
Software infrastructure for efficient representation of full genomes and their SNPs
Bioconductor/GenomicAlignments
Representation and manipulation of short genomic alignments
Bioconductor/SparseArray
High-performance sparse data representation and manipulation in R
Bioconductor/KEGGREST
Client-side REST access to KEGG
mojaloop/sdk-standard-components
A set of components that encode standard practices for interacting with Mojaloop API compliant systems
Bioconductor/genefilter
genefilter: methods for filtering genes from high-throughput experiments
Bioconductor/GSEABase
Gene set enrichment data structures and methods
Bioconductor/S4Arrays
Foundation of array-like containers in Bioconductor
Bioconductor/BSgenomeForge
Tools to forge BSgenome data packages
Bioconductor/ensemblVEP
[DEPRECATED] R Interface to Ensembl Variant Effect Predictor
Bioconductor/GOstats
Tools for manipulating GO and microarrays.
Bioconductor/graph
graph: A package to handle graph data structures