Bioconductor/AnnotationHub

Issues

• Error: bad_weak_ptr when accessing annotation hub object using genes() (probable bug)

  #47 opened 3 months ago by klai001
  2

• ah <- AnnotationHub() not working

  #57 opened 3 months ago by priya-naraypx1
  1

• A wrong match for "AH116340"

  #56 opened 3 months ago by bioinf-kud
  8

• AH116860 - error file is not a database

  #54 opened 4 months ago by methornton
  4

• dbplyr update is breaking AnnotationHub

  #46 opened a year ago by mjsteinbaugh
  3

• Human EnsemblDB v112 is only available for GRCh37

  #53 opened 5 months ago by zyh4482
  1

• Select() issue

  #52 opened 7 months ago by LucasMcNU
  18

• AnnotationHub and GO Terms

  #51 opened 8 months ago by famfigueiredo
  1

• Error with sesameDataCatche

  #50 opened 9 months ago by AndersJoergensen
  2

• Vignette title vs name of Rmd file

  #48 opened a year ago by hpages
  2

• Require explict consent when accessing data with restrictive licenses

  #45 opened a year ago by mtmorgan
  0

• Error: failed to load resource

  #44 opened a year ago by ericsan119
  3

• R Cannot connect to AnnotationHub server

  #43 opened a year ago by gxt13111560461
  10

• Non-descriptive error

  #27 opened 3 years ago by BaylieRW
  4

• how to get CpGs for hg38 ?

  #42 opened a year ago by sahuno
  3

• permission denied cannot open compressed file

  #41 opened 2 years ago by Dane-Z
  3

• "R CMD check" failure on Linux ARM64

  #40 opened 2 years ago by martin-g
  10

• AnnotationHub Update

  #39 opened 2 years ago by gnatowskie
  2

• compress sqlite on server and download/uncompress locally to speed up download times

  #38 opened 2 years ago by lshep
  1

• "reason: this db is of type Inparanoid8Db but this is not a defined class"

  #35 opened 2 years ago by KMS-Rock
  12

• Issue with executing AnnotationHub()

  #33 opened 2 years ago by jo-ong
  2

• call `dbDisconnect()` warning

  #1 opened 7 years ago by mjsteinbaugh
  13

• permission denied on lock file when using AnnotationHub cache

  #31 opened 3 years ago by daler
  9

• Adding/updating additional annotation data

  #30 opened 3 years ago by svenbioinf
  1

• QFeatures has been fixed

  #29 opened 3 years ago by cvanderaa
  1

• vignette inaccuracy

  #28 opened 3 years ago by vjcitn
  1

• Fetching RepeatMasker Files with AnnotationHub

  #26 opened 3 years ago by mikecuoco
  1

• Poorly annotated plants

  #23 opened 3 years ago by Fred-White94
  2

• Using AnnotationHub with job schedular causes an error

  #16 opened 4 years ago by kokitsuyuzaki
  1

• Hard time troubleshooting a "Corrupt Cache" issue

  #12 opened 4 years ago by hpages
  4

• ah <- AnnotationHub() ---error--- filter_() is deprecated as of dplyr 0.7.0

  #22 opened 4 years ago by CQgit
  6

• AnnotationHub() Error

  #21 opened 4 years ago by JojoZhangxinye
  3

• AnnotationHub(): Server access test is too conservative (with suggestions)

  #20 opened 4 years ago by HenrikBengtsson
  1

• Cannot connect to AnnotationHub server

  #17 opened 4 years ago by reliscu
  3

• HELP: setHubOption() -> setAnnotationHubOption()

  #19 opened 4 years ago by HenrikBengtsson
  0

• Add BugReport: https://github.com/Bioconductor/AnnotationHub/issues (?)

  #18 opened 4 years ago by HenrikBengtsson
  1

• Issue converting Ensembl GTFs

  #15 opened 4 years ago by jmacdon
  25

• AnnotationHub::display() giving incorrect output

  #10 opened 4 years ago by MattBrauer
  14

• Invertebrate Ensembl ID

  #9 opened 5 years ago by kokitsuyuzaki
  11

• Failed compilation with R-3.5.1

  #14 opened 5 years ago by sk-sahu
  3

• EnsDb.Hsapiens.v99

  #13 opened 5 years ago by Ci-TJ
  9

• Accessing a resource with a snapshotDate() before it was available gives a cryptic error

  #11 opened 5 years ago by mtmorgan
  3

• AnnotationHub()

  #5 opened 6 years ago by Indigofera
  14

• curl::has_internet and proxies

  #4 opened 6 years ago by wresch
  5

• Shiny dependency

  #2 opened 7 years ago by lawremi
  9