daler

National Institutes of Health (NIH), National Institute of Child Health and Human Development (NICHD)Bethesda, MD

Pinned Repositories

bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell1.6k 96 1.9k3.2k
bioconda-utils
Utilities for building and managing bioconda recipes
Language:Python96 52 310133
dotfiles
dotfiles, batteries included
Language:Shell18 3 612
gffutils
GFF and GTF file manipulation and interconversion
Language:Python287 14 14878
matplotlibrc
some example matplotlibrc files, and a script display their effects
Language:Python48 4 012
metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Language:Python87 22 3736
pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Language:Python300 16 293102
sphinxdoc-test
experimenting with the best way to push sphinx-generated docs to gh-pages
24 2 031
trackhub
create, manage, and upload track hubs for use in the UCSC genome browser
Language:Python52 8 2020
lcdb-wf
Robust, tested workflows for RNA-seq, ChIP-seq and other high-throughput sequencing analysis
Language:Python20 6 14516

daler's Repositories

daler/pybedtools
Python wrapper -- and more -- for BEDTools (bioinformatics tools for "genome arithmetic")
Language:Python300 16 293102
daler/gffutils
GFF and GTF file manipulation and interconversion
Language:Python287 14 14878
daler/metaseq
Framework for integrated analysis and plotting of ChIP/RIP/RNA/*-seq data
Language:Python87 22 3736
daler/trackhub
create, manage, and upload track hubs for use in the UCSC genome browser
Language:Python52 8 2020
daler/sphinxdoc-test
experimenting with the best way to push sphinx-generated docs to gh-pages
24 2 031
daler/dotfiles
dotfiles, batteries included
Language:Shell18 3 612
daler/hubward
Manage the visualization of large amounts of other people's [often messy] genomics data
Language:Python18 3 14
daler/chromhmm-tools
Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)
Language:Python16 3 43
daler/blender-for-3d-printing
Material for introductory course on using Blender for 3D printing
Language:Python11 2 02
daler/rdbio-scripts
Unorganized collection of bioinformatics scripts and utilities
Language:Python10 3 16
daler/shiny-fet
Shiny app for visualizing the results of a Fisher's exact test
Language:R3 2 0
daler/chromhmm-enhancers-umel
Identify enhancers. Includes data download, liftover, parallelized workflows, results aggregation, and example output.
Language:Python2 2 01
daler/docker-rw2019
Materials for docker demonstration for Spring 2019 Reproducibility Workshop
Language:HTML2 2 0
daler/sphinxleash
Lightweight framework for programatically generating Sphinx docs.
Language:Python2 2 01
daler/build-test
sandbox for bioconda-utils
Language:Python1 2 0
daler/hubward-studies
Config files for running hubward on published data sets.
Language:Python1 2 0
daler/trackhub-demo
Language:Python1 2 0
daler/2015-09-09-NIH
Language:Python0 2 07
daler/aerial.nvim
Neovim plugin for a code outline window
Language:Lua0 0
daler/bioconda-recipes
Conda recipes for the bioconda channel.
Language:Shell2 0
daler/bioconda-utils
Utilities for building and managing bioconda recipes
Language:Python2 0
daler/connect-test
temp repo for testing github status updates
2 0
daler/docker-dokuwiki
Language:Dockerfile0 0
daler/erythroid-genes
Documents the construction of mouse erythroid gene lists
Language:HTML2 11
daler/NIHCloudLabAWS
Documentation and tutorials on using AWS for biomedical research
Language:Jupyter Notebook0 0
daler/Pharmacogenomics_Prediction_Pipeline_P3
Language:R2 0
daler/rsconnect
Publish Shiny Applications, RMarkdown Documents, Jupyter Notebooks, Plumber APIs, and more
Language:R0 0
daler/vim-python-pep8-indent
A nicer Python indentation style for vim.
Language:Vim Script0 0
daler/vogt-particle-tracking
Code to reproduce analysis from Vogt et al 2019 Nature Communications
Language:Jupyter Notebook2 0
daler/zenburn.nvim
Zenburn for the modern age
Language:Lua0 0