bioconda/bioconda-utils

Issues

• Pylint alerts corrections as part of an intervention experiment

  #1017 opened a month ago by evidencebp
  6

• build is adding unexpected 'placehold' paths and failing to find files on aarch64

  #1015 opened 2 months ago by dslarm
  6

• Infrastructure update for Channel Cloning/CDN sync

  #1008 opened 4 months ago by morremeyer
  2

• test/source_files seems dysfunctional in mulled tests

  #897 opened 2 years ago by bernt-matthias
  2

• Lint errors for bumped build number if PR made shortly after merge of new version

  #1007 opened 5 months ago by corneliusroemer
  0

• Support other architectures also supported by conda-forge (e.g. Mac arm64)

  #706 opened 6 months ago by milot-mirdita
  25

• Pass verbosity level to `conda-build`, otherwise very hard to debug

  #1006 opened 6 months ago by corneliusroemer
  0

• `bioconda-utils build` errors with `clangxx_osx-arm64 16.* does not exist (perhaps a typo or a missing channel).`

  #1004 opened 6 months ago by corneliusroemer
  3

• Add version option for `bioconda-utils` cli command

  #1005 opened 6 months ago by corneliusroemer
  2

• Lint if `ignore_run_exports` is in wrong section (under requirements, instead of build)

  #1003 opened 6 months ago by corneliusroemer
  0

• `mulled-build` of Python package (no deps) fails in bioconda-utils >=2.15

  #990 opened 7 months ago by gregdenay
  3

• Current extended-base (`quay.io/bioconda/base-glibc-debian-bash:3.0`) for container builds yields docker images unusable on some systems

  #958 opened 7 months ago by pontus
  10

• PermissionError: [Errno 13] Permission denied: 'docker'

  #989 opened 7 months ago by acarafat
  2

• Fail to install on python 3.12

  #963 opened 9 months ago by alneberg
  0

• argh.exceptions.AssemblingError when using bioconda-utils

  #929 opened a year ago by matrulda
  2

• bioconda-utils autobump --create-pr crashes, but adding --no-shuffle fixes it

  #961 opened 10 months ago by niemasd
  0

• ERROR: recipes/vcboost/meta.yaml:0: linter_failure: An unexpected exception was raised during linting

  #960 opened 10 months ago by oranges7
  0

• Make git-lfs available at cloning time ?

  #957 opened 10 months ago by blinard-BIOINFO
  2

• autobump for GitHub releases fails - presumably because of broken regex

  #934 opened a year ago by nevrome
  1

• An error occurred while installing package 'bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0'.

  #952 opened a year ago by zombiebride226
  3

• bioconda::bioconductor-genomeinfodbdata-1.2.9-r42hdfd78af_0 problems with installation

  #827 opened 2 years ago by francescasci91
  7

• GithubRelease assets are not found via autobump

  #895 opened a year ago by holtjma
  3

• False positive lint `version_constraints_missing_whitespacewhen` for unequal constraint `!=`

  #918 opened a year ago by corneliusroemer
  1

• BiocondaBot merge seems broken

  #905 opened a year ago by acaprez
  2

• Bioconda pins an old libdeflate no longer present in conda-forge's current_repodata

  #871 opened 2 years ago by jmarshall
  2

• Invalid version: '' error in bioconda-utils autobump

  #870 opened 2 years ago by sroener
  0

• Possibility to skip downloading channel info

  #869 opened 2 years ago by bernt-matthias
  0

• Cannot install bioconda-utils: UnsatisfiableError

  #847 opened 2 years ago by mzytnicki
  4

• Non-zero exit code but package get's build and uploaded successfully

  #836 opened 2 years ago by timosachsenberg
  0

• autobump selects older hifiasm version due to changing tag pattern

  #834 opened 2 years ago by kdm9
  0

• Could not install bioconda-utils in new conda environment

  #724 opened 2 years ago by mr-c
  0

• There are outdated links to http://conda.pydata.org

  #830 opened 2 years ago by fabianegli
  0

• another fix for the mulled build memory limitations

  #817 opened 2 years ago by siebrenf
  0

• UnsatisfiableError: The following specifications were found to be incompatible with each other

  #804 opened 2 years ago by rcasero
  4

• lint: missing space in dependency version pins

  #789 opened 2 years ago by siebrenf
  0

• FileNotFoundError when trying to build recipe

  #772 opened 3 years ago by mbhall88
  0

• Internal AssertionError in build command

  #768 opened 3 years ago by jakobnissen
  2

• HOME should be added to the environment

  #767 opened 3 years ago by dpryan79
  0

• Bioconda pins an outdated version of libdeflate from conda-forge

  #720 opened 3 years ago by jmarshall
  8

• Wrong quay image requested when attemping test locally due to different format version.py generated by versioneer

  #736 opened 3 years ago by DrYak
  11

• Thoughts on tool description in Bot's auto bump PR?

  #730 opened 3 years ago by rpetit3
  3

• Error with bioconda

  #731 opened 3 years ago by Char-Al
  1

• bioconda-utils autobump throws cryptic info/error `nextclade has selector in line %i (replace failed)`

  #728 opened 3 years ago by corneliusroemer
  4

• Build DAG is not generated properly

  #726 opened 3 years ago by c-mertes
  0

• complains about valid use of `insteadOf` in my .gitconfig

  #723 opened 3 years ago by mr-c
  1

• Bioconda install error

  #717 opened 3 years ago by hidvegin
  1

• Missing documentation regarding Java tools requiring font packages for downstream containers

  #715 opened 4 years ago by jfy133
  0

• Conda build not tracking wisecondorX repository

  #714 opened 4 years ago by matthdsm
  0

• Autobump incorrectly parses some URLs

  #701 opened 4 years ago by dpryan79
  8

• TypeError when trying to run bioconda-utils

  #694 opened 4 years ago by vinisalazar
  1