jakobnissen
Bioinformatician at RasmussenLab, University of Copenhagen
University of CopenhagenCopenhagen, Denmark
Pinned Repositories
Automa.jl
A julia code generator for regular expressions
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
alen
Simple terminal alignment viewer
ErrorTypes.jl
Rust-like error types in Julia
hardware_introduction
What scientific programmers must know about CPUs and RAM to write fast code.
LibDeflate.jl
Julia bindings for libdeflate
MinHash.jl
Fast and generic implementation of the minhash algorithm
Probably.jl
Probabilistic data structures in Julia
ScanByte.jl
Find your bytes. Fast.
vamb
Variational autoencoder for metagenomic binning
jakobnissen's Repositories
jakobnissen/alen
Simple terminal alignment viewer
jakobnissen/MemViews.jl
Experimental repo for a memory view type in Julia
jakobnissen/BinBencher.jl
Command-line interface for BinBencherBackend.jl
jakobnissen/Automa.jl
A julia code generator for regular expressions
jakobnissen/BinBencherBackend.jl
Library for BinBencher - metagenomic binning benchmarking tool
jakobnissen/BlastParse.jl
Simple function to parse BLAST tabular output
jakobnissen/jakobnissen.github.io
My blog
jakobnissen/advent2023
Advent of Code 2023 in Rust
jakobnissen/advent2024
Advent of Code 2024
jakobnissen/BED.jl
jakobnissen/BGZFStreams.jl
BGZF Stream
jakobnissen/BioAlignments.jl
Sequence alignment tools
jakobnissen/BioGenerics.jl
Generic methods, types and modules for the BioJulia ecosystem.
jakobnissen/BioSequences.jl
Biological sequences for the julia language
jakobnissen/BioSymbols.jl
Nucleic and amino acid primitive types
jakobnissen/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
jakobnissen/FormatSpecimens.jl
Biological file format specimens for testing packages, and functions to assist in testing.
jakobnissen/IO-playground
Testing ground for possible new Julia interface
jakobnissen/isa-l
Intelligent Storage Acceleration Library
jakobnissen/jakobnissen
GitHub profile repo
jakobnissen/JET.jl
An experimental code analyzer for Julia, no need for additional type annotations
jakobnissen/julia
The Julia Language: A fresh approach to technical computing.
jakobnissen/NCBIBlast.jl
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
jakobnissen/OhMyREPL.jl
Syntax highlighting and other enhancements for the Julia REPL
jakobnissen/PkgEval.jl
Keeping tabs on the julia ecosystem
jakobnissen/samstrip
Strip SAM files of data not needed for alignment computations
jakobnissen/StringViews.jl
String-like views of arbitrary Julia byte arrays
jakobnissen/StyledStrings.jl
jakobnissen/wordle
Wordle solver in Rust
jakobnissen/Yggdrasil
Collection of builder repositories for BinaryBuilder.jl