BioJulia

Bioinformatics and Computational Biology in Julia

Pinned Repositories

Automa.jl
A julia code generator for regular expressions
Language:Julia192 14 4716
Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
Language:Julia267 42 14463
BioCore.jl
Core types and interfaces for BioJulia packages
Language:Julia30 16 411
BioMakie.jl
Plotting and interface tools for biology.
Language:Julia68 3 65
BioSequences.jl
Biological sequences for the julia language
Language:Julia158 14 10350
BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Language:Julia105 7 1825
BioSymbols.jl
Nucleic and amino acid primitive types
Language:Julia31 12 1314
Contributing
Documentation, guidelines, and policy on contributing to all BioJulia repositories
15 8 17
GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
Language:Julia43 9 1818
GenomeGraphs.jl
A modern genomics framework for julia
Language:Julia69 15 137

BioJulia's Repositories

BioJulia/Automa.jl
A julia code generator for regular expressions
Language:Julia192 14 4716
BioJulia/BioSequences.jl
Biological sequences for the julia language
Language:Julia158 14 10350
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
Language:Julia105 7 1825
BioJulia/BioMakie.jl
Plotting and interface tools for biology.
Language:Julia68 3 65
BioJulia/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
Language:Julia66 8 4820
BioJulia/BioAlignments.jl
Sequence alignment tools
Language:Julia64 14 3624
BioJulia/PopGen.jl
Population Genetics in Julia
Language:Julia52 6 2616
BioJulia/BioTutorials
Tutorial Notebooks of BioJulia
Language:Jupyter Notebook37 6 58
BioJulia/GenomicFeatures.jl
Tools for genomic features in Julia.
Language:Julia35 12 1013
BioJulia/BioSymbols.jl
Nucleic and amino acid primitive types
Language:Julia31 12 1314
BioJulia/Kmers.jl
Efficient types and methods for K-mer biosequences
Language:Julia29 9 197
BioJulia/XAM.jl
Parse and process SAM and BAM formatted files
Language:Julia29 11 3714
BioJulia/SingleCellProjections.jl
Analysis of Single Cell Expression data in Julia
Language:Julia21 3 93
BioJulia/MemoryViews.jl
Simple, low-level views into memory in Julia
Language:Julia20 2 21
BioJulia/GenomicAnnotations.jl
Language:Julia17 7 164
BioJulia/BioTools.jl
DEPRECATED Interfaces to common external biological tools from julia scripts and programs
Language:Julia14 11 37
BioJulia/BufIO.jl
Interface for efficient IO in Julia
Language:Julia13
BioJulia/ProteinSecondaryStructures.jl
Wrapper to protein secondary structure calculation packages
Language:Julia13 5 61
BioJulia/TwoBit.jl
Support for working with 2Bit formatted sequence data files
Language:Julia11 8 33
BioJulia/BioMarkovChains.jl
Representing biological sequences as Markov chains
Language:Julia9 2 22
BioJulia/biojulia.github.io
BioJulia's Website
Language:HTML7 3 115
BioJulia/BED.jl
Language:Julia6 9 76
BioJulia/BioJuliaDocs
Language:Julia6 3 54
BioJulia/NCBIBlast.jl
Thin wrapper around NCBI's BLAST+ CLI https://www.ncbi.nlm.nih.gov/books/NBK569856/
Language:Julia6 3 42
BioJulia/PopGenCore.jl
Core utilities for PopGen.jl, including the PopData type and file IO
Language:Julia6 7 112
BioJulia/KWayMerges.jl
Implementation of k-way merge algorithms in Julia
Language:Julia4
BioJulia/Indexes.jl
Language:Julia3 9 44
BioJulia/PairwiseMappingFormat.jl
Parser for the PAF format in bioinformatics
Language:Julia3 2 0
BioJulia/XAMAuxData.jl
Read auxiliary data fields in SAM, GFA and PAF formats
Language:Julia3 3 0
BioJulia/CIGARStrings.jl
Read and write Concise Idiosyncratic Gapped Alignment Reports.
Language:Julia1 3 0