Pinned Repositories
Automa.jl
A julia code generator for regular expressions
Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
BioCore.jl
Core types and interfaces for BioJulia packages
BioSequences.jl
Biological sequences for the julia language
BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
BioSymbols.jl
Nucleic and amino acid primitive types
Contributing
Documentation, guidelines, and policy on contributing to all BioJulia repositories
FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
GenomeGraphs.jl
A modern genomics framework for julia
BioJulia's Repositories
BioJulia/Bio.jl
[DEPRECATED] Bioinformatics and Computational Biology Infrastructure for Julia
BioJulia/Automa.jl
A julia code generator for regular expressions
BioJulia/BioSequences.jl
Biological sequences for the julia language
BioJulia/BioStructures.jl
A Julia package to read, write and manipulate macromolecular structures
BioJulia/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
BioJulia/BioMakie.jl
Plotting and interface tools for biology.
BioJulia/IntervalTrees.jl
A data structure for efficient manipulation of sets of intervals
BioJulia/PopGen.jl
Population Genetics in Julia
BioJulia/GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
BioJulia/GenomicFeatures.jl
Tools for genomic features in Julia.
BioJulia/BioSymbols.jl
Nucleic and amino acid primitive types
BioJulia/BioTutorials
Tutorial Notebooks of BioJulia
BioJulia/XAM.jl
Parse and process SAM and BAM formatted files
BioJulia/Kmers.jl
In development: Kmer types and methods for julia
BioJulia/SubstitutionModels.jl
Biological Sequence Substitution Models for Julia
BioJulia/Contributing
Documentation, guidelines, and policy on contributing to all BioJulia repositories
BioJulia/SingleCellProjections.jl
Analysis of Single Cell Expression data in Julia
BioJulia/GenomicAnnotations.jl
BioJulia/BGZFStreams.jl
BGZF Stream
BioJulia/BioGenerics.jl
Generic methods, types and modules for the BioJulia ecosystem.
BioJulia/GFF3.jl
BioJulia/KmerAnalysis.jl
K-mer counting algorithms and count-data utilities for the BioJulia framework
BioJulia/FormatSpecimens.jl
Biological file format specimens for testing packages, and functions to assist in testing.
BioJulia/ReadDatastores.jl
Datastores for reads, not your papa's FASTQ files.
BioJulia/WaveletMatrices.jl
The Wavelet Matrix
BioJulia/biojulia.github.io
BioJulia's Website
BioJulia/PopGenCore.jl
Core utilities for PopGen.jl, including the PopData type and file IO
BioJulia/BioJuliaDocs
BioJulia/Indexes.jl
BioJulia/KmerAnalysisMakie.jl
Makie recpies for visualising KmerAnalysis types and results.