BioJulia/GeneticVariation.jl

Issues

• Cannot install the package for Julia 1.0.1

  #22 opened a year ago by kavir1698
  2

• Cannot install this package

  #32 opened a year ago by yuehhua
  1

• Add Project.toml

  #29 opened a year ago by jakobnissen
  4

• Fails to parse metadata with hypen in the key

  #35 opened a year ago by apraga
  0

• GeneticVariation.VCF.Reader does not like output from the gatk tool: funcotator

  #34 opened 2 years ago by jackmo375
  0

• multiple allele separated by semicolon in ALT field

  #33 opened 3 years ago by marbeno
  0

• cannot read vcf from Sanger

  #30 opened 4 years ago by pfarndt
  1

• Make parser unambiguous

  #28 opened 4 years ago by jakobnissen
  2

• Looping over vcf file 10x slower than reading line by line

  #27 opened 4 years ago by biona001
  0

• Looping over a VCF file seems to incur huge memory

  #26 opened 4 years ago by biona001
  0

• BCF.chrom always returns 1

  #25 opened 5 years ago by kaskarn
  3

• ERROR: LoadError: GeneticVariation.VCF.Reader file format error on line 254 ~>";esv3585"

  #24 opened 5 years ago by gtollefson
  5

• LoadError: ArgumentError: Package GeneticVariation does not have Compat in its dependencies

  #23 opened 6 years ago by gtollefson
  0

• 1.0 Support

  #20 opened 6 years ago by dialvarezs
  3

• ERROR: LoadError: GeneticVariation.VCF.Reader file format error - unexpected metainfo line from GATK command line

  #18 opened 6 years ago by gtollefson
  4

• GeneticVariation.VCF.filter(reader) fails when encounters missing filter

  #17 opened 6 years ago by gtollefson
  3

• Drop julia 0.5 support

  #6 opened 7 years ago by TransGirlCodes
  1

• get_bio_fmt_specimens() has started failing

  #8 opened 7 years ago by tkelman
  2