snps
There are 151 repositories under snps topic.
tseemann/snippy
:scissors: :zap: Rapid haploid variant calling and core genome alignment
Illumina/strelka
Strelka2 germline and somatic small variant caller
tariqdaouda/pyGeno
Personalized Genomics and Proteomics. Main diet: Ensembl, side dishes: SNPs
edgardomortiz/vcf2phylip
Convert SNPs in VCF format to PHYLIP, NEXUS, binary NEXUS, or FASTA alignments for phylogenetic analysis
apriha/lineage
tools for genetic genealogy and the analysis of consumer DNA test results
mentatpsi/OSGenome
An Open Source Web Application for Genetic Data (SNPs) using 23AndMe and Data Crawling Technologies
cslarsen/arv
A fast 23andMe DNA parser and inferrer for Python
apriha/snps
tools for reading, writing, merging, and remapping SNPs
neurogenomics/MAGMA_Celltyping
Find causal cell-types underlying complex trait genetics
cslarsen/dna-traits
A fast 23andMe genome text file parser, now superseded by arv
ropensci/rsnps
Wrapper to a number of SNP web APIs
BioJulia/PopGen.jl
Population Genetics in Julia
OpenMendel/SnpArrays.jl
Compressed storage for SNP data
chadlaing/Panseq
Pan-genomic sequence analysis
huwenboshi/hess
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
BioJulia/GeneticVariation.jl
Datastructures and algorithms for working with genetic variation
kaustubhad/fastman
An R package for fast and efficient visualizing of GWAS results using Q-Q and Manhattan plots directly from PLINK output files.
mkpython3/Mutation-Simulator
A tool for simulating random mutations in any genome
pievos101/PopGenome
An Efficient Swiss Army Knife for Population Genomic Analyses in R
ilarsf/gwasTools
Basic and fast GWAS functions for QQ and Manhattan plots (incl. gene names)
slowkow/proxysnps
:bookmark: Get SNP proxies from the 1000 Genomes Project.
aquaskyline/16GT
Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model
xukaili/CandiHap
A haplotype analysis toolkit for natural variation study.
EricArcher/strataG
strataG is a toolkit for haploid sequence and multilocus genetic data summaries, and analyses of population structure.
pimbongaerts/radseq
Collection of Python scripts for parsing/analyses of RAD-seq data
medvedevgroup/vargeno
Towards fast and accurate SNP genotyping from whole genome sequencing data for bedside diagnostics.
USDA-VS/vSNP
vSNP -- validate SNPs
glasgowm148/Phenotype
An Open Source Web Application for Genetic Data (SNPs) Data Crawling
chgibb/PHAT
Pathogen-Host Analysis Tool - A modern Next-Generation Sequencing (NGS) analysis platform
Sydney-Informatics-Hub/Bioinformatics
A suite of bioinformatics data processing and analysis pipelines, software, and training resources for common methods.
jonas-fuchs/virHEAT
Visualize microbial evolution at the SNP level!
esteinig/brick
BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons :microbe:
YTLogos/BnaSNPDB
An interactive web portal for exploring SNPs among 1,007 rapeseed germplasm accessions
justincbagley/piranha
Scripts for file processing and analysis in phylogenetics and phylogeography
lauzingaretti/pSBVB
Manual
tbrunetti/QuaCK
Quality Control Summary Pipeline for Array-based Genome Studio Projects (idats, raw genotype quality)