Illumina/strelka

Issues

• INFO/DP field not reported

  #219 opened 2 years ago by SusiJo
  1

• How is strand bias calculated and what does it mean in this context?

  #243 opened 3 months ago by CraigJAnderson
  0

• Will a insertion/deletion at the end of a callRegion be called?

  #242 opened 4 months ago by ray1919
  0

• Meaning of taskExitCode -9

  #232 opened a year ago by Jessime
  1

• All variants being labeled as "LowEVS"

  #231 opened a year ago by ElizabethBorden
  1

• Error calling bam files derived from standard ONT

  #241 opened 6 months ago by nparmalee
  0

• Python3

  #240 opened 8 months ago by lculibrk
  1

• call mtDNA variants from scRNA or WGS

  #239 opened 8 months ago by isadeghi87
  0

• how to install strelka on linux?

  #238 opened 8 months ago by gabrielet
  3

• DEVELOPER_MODE is true in src release tarballs

  #237 opened 9 months ago by aowenson-imm
  0

• Got WARNING and ERROR info when using StrelkaSomaticWorkflow

  #218 opened 2 years ago by Dragonlongzhilin
  2

• GQ and PL fields

  #236 opened 10 months ago by mashid
  0

• unusual allele calls following indel

  #214 opened 2 years ago by mcfiston
  1

• Include AD (allelic depths) in format from somatic variants

  #233 opened a year ago by juliawiggeshoff
  1

• Scripts to extract variant allele frequency (VAF)

  #234 opened a year ago by maximus3219
  1

• Strelka filtering out important variant

  #235 opened a year ago by yusufzhc
  0

• Error in running strelka 2.9.10

  #210 opened 3 years ago by TZhang11
  1

• Incorrect handling of non-N nucleotides with quality zero after Q-score binning

  #230 opened a year ago by ivan-mh
  0

• Failing to index VCF file

  #229 opened a year ago by acboulet
  0

• Number of AD, ADF and ADR should be "R"

  #228 opened 2 years ago by christopher-schroeder
  0

• inconsistent reproducibility of variants

  #227 opened 2 years ago by anoronh4
  0

• How to detect somatic mutations with allele frequencies nearly 0.01?

  #225 opened 2 years ago by wuyuling327
  1

• Only the first Genome Segment called when putting entire chromosome in .bed file

  #226 opened 2 years ago by sergeyvilov
  0

• Can't find any expected BAM/CRAM index files

  #200 opened 3 years ago by MaitreyaSil
  1

• Long error using the code below

  #224 opened 2 years ago by HyojeenLee
  0

• Which command to use for somatic calling and RNA sequencing?

  #223 opened 2 years ago by HyojeenLee
  0

• CONFIGURATION ERROR: Reference genome mismatch:

  #222 opened 2 years ago by HyojeenLee
  0

• Does input fastq need process of splicing in advance?

  #221 opened 2 years ago by HyojeenLee
  0

• make process bug

  #220 opened 2 years ago by hzongyao
  0

• Guidelines/tips for filtering VCFs after running strelka2 germline?

  #217 opened 2 years ago by seetarajpara
  0

• increase sensitivity

  #216 opened 2 years ago by lmanchon
  0

• Can't find reference fasta file

  #215 opened 2 years ago by morrirestistance
  0

• Should i deduplicate bam file using picard before call somatic

  #208 opened 3 years ago by changyunjian
  1

• --callRegions for WGS - run in parallel for i.e. each Chromosome

  #206 opened 3 years ago by FriederikeHanssen
  2

• Error in running strelka

  #199 opened 3 years ago by WengangXbio
  1

• Using Strelka2 for Allele-Specific Expression (ASE) - RNAseq

  #213 opened 3 years ago by gpalou4
  0

• Scoring model features

  #212 opened 3 years ago by LeiHaoa
  0

• strelka2 Assertion `! indelRates.isInit' failed

  #211 opened 3 years ago by sagitaninta
  1

• Call variants using strelka

  #209 opened 3 years ago by Hrishi4545
  0

• Which fields/TAGS does strelka use?

  #207 opened 3 years ago by ksahlin
  0

• Parsing read depth and allele frequency from Strelka VCF

  #205 opened 3 years ago by Wangxin555
  0

• Installing Strelka2 on macOS

  #203 opened 3 years ago by kris-nader
  0

• rna flag in variants calling

  #202 opened 3 years ago by maringa780
  0

• Question: Quality score de novo (DQ)

  #201 opened 3 years ago by Talo07
  0

• Variant Allele Frequency with Strelka v2.9.10

  #198 opened 3 years ago by YanaVassileva
  0

• Somatic variant calling in RNA?

  #197 opened 3 years ago by alexandruioanvoda
  0

• Variant in RNA

  #196 opened 3 years ago by alfonso-lam
  0

• Installation errors - binaries/release code

  #195 opened 3 years ago by desmodus1984
  0

• Problem with Strelka2's default parameter "maxIndelSize = 49"

  #194 opened 3 years ago by Tinnaa
  1

• variant position in repeats

  #193 opened 4 years ago by cariaso
  0