Pinned Repositories
boto
Python interface to Amazon Web Services
CircosWikiWalker
https://docs.google.com/present/edit?id=0ASx0fqaSeLD1YWprdGptaGY4YnNwXzIwMDZnZ21oNnRkeA
dna
Suggested edits to the Manu Sporny genome.
elastic-flask-baseline
A baseline Flask + FPS application suitable for use on Amazon Elastic Beanstalk.
LocalS3Repo
MediaWiki S3 and CloudFront Extension
mpiblast-build
Automatically exported from code.google.com/p/mpiblast-build
MultiLoc2
subcellular protein localization prediction
Semantic-MediaWiki-Bot
Not quite working well yet, as the server side is still evolving, but a useful skeleton for my next round of improvement. http://bugzilla.wikimedia.org/show_bug.cgi?id=45303
smwcon2012bots
example bots in multiple languages in preparation for http://semantic-mediawiki.org/wiki/SMWCon_Spring_2012
sqlalchemy-s3sqlite
persist a sqlite database in s3, for use with aws lambda
cariaso's Repositories
cariaso/sqlalchemy-s3sqlite
persist a sqlite database in s3, for use with aws lambda
cariaso/LocalS3Repo
MediaWiki S3 and CloudFront Extension
cariaso/MultiLoc2
subcellular protein localization prediction
cariaso/bcbio-nextgen-vm
Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines
cariaso/Computational_Medicine_1
Understanding how to index and use complex variants to more precisely categorize disease
cariaso/cromwell
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments
cariaso/Cyrius
A tool to genotype CYP2D6 with WGS data
cariaso/dolphins
cariaso/eutils
cariaso/flask-security
Quick and simple security for Flask applications
cariaso/Flask-User
Customizable User Authorization and Management for Flask: Register, Confirm email, Login, Change username, Change password, Forgot password and more.
cariaso/flickr-download
Tool for downloading sets and photos from Flickr
cariaso/HLA
xHLA: Fast and accurate HLA typing from short read sequence data
cariaso/hvac
:lock: Python 2/3 client for HashiCorp Vault
cariaso/mediawiki-extensions-GoogleTagManager
Github mirror of MediaWiki extension GoogleTagManager - our actual code is hosted with Gerrit (please see https://www.mediawiki.org/wiki/Developer_access for contributing
cariaso/metapub
Python toolkit for NCBI metadata (via eutils) and pubmed article text mining -- official primary repo.
cariaso/mwclient
mwclient is a Python framework to interface with the MediaWiki API.
cariaso/octopus
Bayesian haplotype-based mutation calling
cariaso/OligoRL
A Reinforcement Learning Framework for Pooled Oligonucleotide Design
cariaso/open-cravat
A modular annotation tool for genomic variants
cariaso/paper-qa
LLM Chain for answering questions from documents with citations
cariaso/pta
tools used for somerset es pta work
cariaso/pysam
Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.
cariaso/python-sar
Python SAR parser module
cariaso/python3-secureconfig
python3 fork of python-secureconfig
cariaso/s3abird
Webmail client for emails stored on S3
cariaso/StarCluster
StarCluster is an open source cluster-computing toolkit for Amazon's Elastic Compute Cloud (EC2).
cariaso/txtorcon
Twisted-based asynchronous Tor control protocol implementation. Includes unit-tests, examples, state-tracking code and configuration abstraction.
cariaso/zcash-btcpay
cariaso/zebraguide