huwenboshi/hess
Estimate local SNP heritability and genetic covariance from GWAS summary association statistics.
HTMLGPL-3.0
Issues
- 1
Reference panel for asian
#39 opened by github-wzchhh - 1
- 1
Issue with HESS: pandas.errors.ParserError
#38 opened by DaXuanGarden - 0
0 SNPs left after filtering
#37 opened by lijunpeng-albert - 0
- 0
- 3
Step 2 local rg routine: AttributeError: 'float' object has no attribute 'sqrt'
#2 opened by dantylee - 10
1kg_eur_1pct_chr
#26 opened by auglgh - 0
Floating point exception
#33 opened by umbrellaling - 0
INFO] 1 SNPs in locus chr12:8377536-9031395 IndexError: tuple index out of range
#32 opened by umbrellaling - 6
Error in HESS step 1
#29 opened by guohuangda - 0
step1 KeyError: 'ID"
#31 opened by AEAEAESSC - 0
error in step1
#30 opened by AEAEAESSC - 0
install HESS
#28 opened by AEAEAESSC - 0
- 6
#Step1-IndexError: tuple index out of range
#24 opened by DongshengWu - 4
IndexError: list index out of range for local rg
#20 opened by nenduru1 - 6
ERROR Missing files for the reference panel
#21 opened by heihaheihaha - 0
keyerror:local_hsqg_manhattan.py
#25 opened by umbrellaling - 0
I cannot module load refpanl
#23 opened by harryyiheyang - 3
phenotypic correlation for step 3
#22 opened by nrs225 - 1
"KeyError:1614" was reported when using [contrast_polygenicity.py] to make the plot among five traits.
#19 opened by siqi2401 - 0
Interpretation of results
#18 opened by lalagkaspn - 0
Issue with chromosome 8 reference panel?
#16 opened by danieljrichard - 2
estimate_lambdagc.py output
#15 opened by haerin0106 - 4
Dealing with loci with no SNP
#8 opened by ggittu - 4
How to remove loci with no SNPs?
#1 opened by dantylee - 2
Updated release for python 3?
#14 opened by meghatron21 - 1
Step 2 error
#5 opened by kglanville - 2
Step 1 Error
#6 opened by bperry089 - 1
Partition files for GRCh38
#13 opened by idacalle - 0
refpanel in step 1
#12 opened by Mary-mufford - 1
NaN in putative causality analysis
#7 opened by vackground - 1
- 2
Step 1 error
#3 opened by sonia-shah