BioJulia/Bio.jl

Issues

• I am trying to run 'using Biosequences' on Julia Version 1.4.1 on a Windows 10 PC.

  #501 opened 4 years ago by ManaseeTW
  9

• support Us to migrate from R lang (xcms) to Julia (BioJulia)

  #498 opened 4 years ago by dorvan
  5

• Split Seq.Demultiplexer off to BioSeqDemuxers.jl

  #447 opened 4 years ago by kdm9
  0

• Any interest in statistical genetics from BioJulia community?

  #400 opened 4 years ago by klkeys
  3

• Broken Contributing link

  #489 opened 4 years ago by miguelraz
  8

• I am trying the code 'using Biosequences'

  #500 opened 5 years ago by ManaseeTW
  1

• New data structure for biomolecular structures

  #475 opened 5 years ago by bicycle1885
  8

• PDBx/mmCIF and PDBML/XML support.

  #439 opened 5 years ago by bicycle1885
  6

• Installing BioJulia using Docker

  #479 opened 5 years ago by bicycle1885
  5

• Migrating to modular software organization

  #425 opened 5 years ago by TransGirlCodes
  86

• Move organisation level issues

  #434 opened 5 years ago by TransGirlCodes
  4

• Distributed and Threaded Parallelism in the BioJulia Suite

  #347 opened 5 years ago by ChrisRackauckas
  6

• The coalescent in Bio.jl

  #375 opened 5 years ago by TransGirlCodes
  5

• when i try using bio julia i get this error message:

  #499 opened 5 years ago by waweruk2001
  1

• search function is undefined

  #496 opened 5 years ago by yangli-ai
  2

• Checking whether or not an Interval overlaps with an Interval Collection

  #464 opened 6 years ago by phbromley
  1

• Discriminate between exact Interval matches and overlaps

  #471 opened 6 years ago by phaverty
  7

• Julia v0.6 compatability

  #480 opened 6 years ago by CorySimon
  9

• Publish a new release ?

  #497 opened 6 years ago by jonathanBieler
  2

• Error loading Bio

  #495 opened 6 years ago by JokingHero
  4

• Move file format readers and writers in separated modules.

  #401 opened 6 years ago by bicycle1885
  5

• biojl.org is sometimes down

  #362 opened 6 years ago by jgreener64
  12

• [Proposal] New parser design for faster parsing.

  #382 opened 6 years ago by bicycle1885
  4

• Allocations in `FASTAReader`

  #368 opened 6 years ago by pwl
  12

• StringField broken on Julia 0.6

  #469 opened 6 years ago by phaverty
  3

• Bio.Align to read bam file Julia 0.6.2

  #491 opened 7 years ago by rgate
  1

• Make Bio.Intervals.Interval immutable.

  #435 opened 7 years ago by bicycle1885
  3

• Missing fields

  #405 opened 7 years ago by bicycle1885
  3

• Just a heads up...

  #481 opened 7 years ago by sbromberger
  3

• Test on Bio.Var

  #467 opened 7 years ago by bicycle1885
  2

• CI failure

  #476 opened 7 years ago by bicycle1885
  5

• Installation of Bio.jl master branch; HttpParser fails

  #478 opened 7 years ago by weinstockj
  2

• alternate name for `intersect` method?

  #470 opened 7 years ago by phaverty
  3

• BigWig IO functions

  #352 opened 8 years ago by yuifu
  2

• How to get kmer counts of a particular kmer?

  #456 opened 8 years ago by CorySimon
  7

• Lots of allocations when reading FASTQ files

  #437 opened 8 years ago by tlnagy
  10

• needs update for string.data changes

  #369 opened 8 years ago by stevengj
  2

• Bio.Intervals test fail when using IntervalTrees v0.1.1.

  #398 opened 8 years ago by TransGirlCodes
  2

• IntervalCollectionStreamIterator is broken.

  #429 opened 8 years ago by bicycle1885
  5

• description() and identifier() not working for FASTA.Reader

  #424 opened 8 years ago by kescobo
  8

• Use of Ternary Operator in Code

  #423 opened 8 years ago by kescobo
  3

• Error showing value of type Bio.Intervals.GFF3Attributes

  #371 opened 8 years ago by bdeonovic
  6

• "shared" flag issues and sequence reallocation

  #397 opened 8 years ago by pwl
  8

• Rename DNANucleotide to DNA?

  #391 opened 8 years ago by bicycle1885
  1

• ERROR: BGZFStreams.BGZFDataError("invalid gzip identifier")

  #384 opened 8 years ago by bdeonovic
  14

• SAM parser

  #373 opened 8 years ago by bdeonovic
  4

• GFF3 parsing

  #363 opened 8 years ago by bdeonovic
  6

• LoadError: could not spawn `blastn.....

  #354 opened 8 years ago by zahachtah
  9

• Gaps added by reverse with BioSequence slices

  #356 opened 8 years ago by timbitz
  1

• inconsistent dna"" - DNASequence() behavior

  #348 opened 8 years ago by cjprybol
  10