weinstockj
Assistant Professor at Emory University, working on statistical genetics and genomics
Emory UniversityAtlanta, GA
Pinned Repositories
char_rnn_experiment
A fork of https://github.com/sherjilozair/char-rnn-tensorflow
LLCB
Contains the LLCB method from Weinstock* and Arce* et al., 2023
PACER_analyses
Analyses supporting the TCL1A PACER manuscript (Weinstock* & Gopakumar*, et al., Nature 2023)
passenger_count_variant_calling
Count passenger mutations from WGS
pileup_region
A simple rust application to count alt reads in a specified list of positions.
recommend
recommender system project for Machine Learning 574
recurrent_somatic_variants
An R package for analyzing somatic variation in TOPMed. Used in Weinstock et al., Science Advances, 2023
telomere-length-pipeline
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
weinstockj's Repositories
weinstockj/pileup_region
A simple rust application to count alt reads in a specified list of positions.
weinstockj/telomere-length-pipeline
A cloud-based pipeline to estimate telomere lengths from WGS data using Telseq
weinstockj/ad2vcf
Add allelic depth info from a SAM stream to a VCF file
weinstockj/LLCB
Contains the LLCB method from Weinstock* and Arce* et al., 2023
weinstockj/PACER_analyses
Analyses supporting the TCL1A PACER manuscript (Weinstock* & Gopakumar*, et al., Nature 2023)
weinstockj/passenger_count_variant_calling
Count passenger mutations from WGS
weinstockj/recurrent_somatic_variants
An R package for analyzing somatic variation in TOPMed. Used in Weinstock et al., Science Advances, 2023
weinstockj/BCF_info_tag_counter
A simple Rust application that sums the genotypes across variants and samples when a given info tag is present
weinstockj/bcftools_docker_build
This repo includes a Dockerfile to build a bcftools docker image
weinstockj/config
This repo is for storage of various system configuration files and setup files
weinstockj/covid19-labWAS
R package supporting the Michigan Medicine COVID19-LabWAS manuscript
weinstockj/duckdb_docker
Docker image for running duckdb
weinstockj/EPACTS
weinstockj/filter_somatic_variants_gwas_topmed
A collection of Go scripts to create a database of potential somatic artifacts in the TOPMed germline calls.
weinstockj/GEM
weinstockj/GSSG_snakemake
A fork of the GSSG repo which includes a Snakemake pipline
weinstockj/gwassim
Code for an R package to simulate GWAS data and implements gene-based tests
weinstockj/hsc_simulation
A simulation of clonal hematopoiesis implemented in Julia
weinstockj/htslibr
An R package that bundles htslib and provides some additional utilities
weinstockj/julia-epacts
A prototype for using Julia to run association tests against a VCF
weinstockj/lab_website
weinstockj/longitudinal_clonal_expansion_analysis
weinstockj/lumpy-sv
lumpy: a general probabilistic framework for structural variant discovery
weinstockj/RNAseq-perturbation-CD4-pipeline
weinstockj/rvtest_wrapper
A toy wrapper to rvtest that generates Makefiles for parallel execution
weinstockj/somatic_was_analyses
An application of the somaticWas R package
weinstockj/tensorflow_installation
Build tensorflow from source on CPUs that don't support AVX instructions
weinstockj/TOPMed-RNAseq-identity-checking
Sample identity checking for TOPMed RNA-seq data
weinstockj/TOPMed_finemapping
Finemap TOPMed GWAS summary stats using SUSIE
weinstockj/wedding-website
Our Wedding Website