Pinned Repositories
Aligater
Software suite for detection/analysis of chimeric RNAs from LIGR-seq data
Bio.jl
Bioinformatics and Computational Biology Infrastructure for Julia
BrindlePlots.jl
Visualization package for Whippet.jl
EvoDuplexes.jl
A Julia package to fold all local and long-range RNA duplexes.
FMIndexes.jl
FM-index for full-text search
Isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
Isosceles_Paper
Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
timbitz's Repositories
timbitz/Whippet.jl
Lightweight and Fast; RNA-seq quantification at the event-level
timbitz/Isosceles
The Isoforms from Single-Cell; Long-read Expression Suite
timbitz/Aligater
Software suite for detection/analysis of chimeric RNAs from LIGR-seq data
timbitz/EvoDuplexes.jl
A Julia package to fold all local and long-range RNA duplexes.
timbitz/Isosceles_Paper
timbitz/BrindlePlots.jl
Visualization package for Whippet.jl
timbitz/FMIndexes.jl
FM-index for full-text search
timbitz/Bio.jl
Bioinformatics and Computational Biology Infrastructure for Julia
timbitz/deSALT
deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads
timbitz/diffR
timbitz/BioSequencesKmers.jl
Kmers from BioSequences 2.0.5
timbitz/FitHiChIP
Statistically Significant loops from HiChIP data
timbitz/IntervalTrees.jl
A data structure for efficient manipulation of sets of intervals
timbitz/SuffixArrays.jl
Native Julia suffix array implementation; Derived from sais
timbitz/timbitz.github.io
timbitz/vast-tools
A toolset for profiling alternative splicing events in RNA-Seq data.
timbitz/WaveletMatrices.jl
The Wavelet Matrix